Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01658 ATGAGTGAGACAGCCAGTCTTCATGCACAGACAAGGACACCCATTTCTTCTCTTGAAGCCATGGCTCATCATCACCCGCATTATCGGTCACCCTTCGGAGACACTACCTTCACCAAACTCTTCGTCGGAGGACTAGCCTGGGAGACTCCCACCGAAGAAATGCGCAAATATTTCCAGCAGTTCGGGGACATTCTTGAAGCTGTCATAATCACTGACAAAAACACCGGAAAATCCAAAGGCTACGGTTTCGTAACATTCTGCGACCAAGAATCAGCAAGAAGAGCATGTGCTGATCCAAATCCAATAATAGATGGCAGAAGAGCAAATTGCAATATTGCTTCTCTGGGAAGGACTCGACCTTCACCACCTCGAGGTATTTTGGTGGGTGGTAATGCAGGGAGGAATATAGTTCAAGGTGGAGGAGGAACAACAGTACAGAGTGTTCCGGGAGCGGGAGCGCCGCCGTCGCTGCCGCCAGCACCTGCTGTTCTGTATCCGCCATATGGCTACGCAGCCTACACTCCTGATTATGGATACCACCACCAAGCGACATTGTACAACCCACAGATTCAGCAACCACAATACTATCAACAAGTCTACGGAGCATCATCTTCCACCATGAGCACCCCGTATTACTATGGTTACTCTGTGCAAGCACCAAGAAACACATTTTCCTCACCCCAGGCAAATCGTCTATCACCTGGACCATCTTATCTGTACTATCCTACACCCGTGGAAGTCTCATTCTCTGCATATCGCCCACTCCAATCACCAGTGACCCAAAGCTTTCCTTCTCCAACTGTTGAAGGTGCAGCAGATGATACTGATACTGAACCTATCCATGAAAGTTCCTTTCATTCCTCTGCAATATTCCTGTCCATGGTCACTTCCAATTCCTTCACCTCCACTTTCCTAAACCTCGGAATCTAA 930 0.4828 MSETASLHAQTRTPISSLEAMAHHHPHYRSPFGDTTFTKLFVGGLAWETPTEEMRKYFQQFGDILEAVIITDKNTGKSKGYGFVTFCDQESARRACADPNPIIDGRRANCNIASLGRTRPSPPRGILVGGNAGRNIVQGGGGTTVQSVPGAGAPPSLPPAPAVLYPPYGYAAYTPDYGYHHQATLYNPQIQQPQYYQQVYGASSSTMSTPYYYGYSVQAPRNTFSSPQANRLSPGPSYLYYPTPVEVSFSAYRPLQSPVTQSFPSPTVEGAADDTDTEPIHESSFHSSAIFLSMVTSNSFTSTFLNLGI 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01658 309 FunFam RNA-binding protein 24-B isoform X1 25 132 - -
Vian4g01658 309 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 97 IPR000504 GO:0003723
Vian4g01658 309 MobiDBLite consensus disorder prediction 260 279 - -
Vian4g01658 309 SUPERFAMILY RNA-binding domain, RBD 21 131 IPR035979 GO:0003676
Vian4g01658 309 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 115 IPR000504 GO:0003723
Vian4g01658 309 PANTHER BOULE-RELATED 16 260 - -
Vian4g01658 309 SMART rrm1_1 39 111 IPR000504 GO:0003723
Vian4g01658 309 CDD RRM_RBM24_RBM38_like 38 113 - -
Vian4g01658 309 Gene3D - 5 130 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01658 Vian-Chr4 32546369 32551572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01658 34 114 C2H2 Transcription Factor Family AT2G19380 38.272 1.06e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01658 K25006 - gmx:100794651 430.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01658 4 32546369 32551572 Vian4g01658 4 32546369 32551572 ECH
Vian7g00011 7 747378 751778 Vian4g01658 4 32546369 32551572 PCT