Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01650 ATGAAATCCAAGAAGAGAGGACGTGAGTCTATGGGTGCCATGCAAACGATGACAAAAGAGGGAGCAGCCTCCTCTTTGCGTGCATGGGAGGGGTTCCTCCGACAAGCACTCATTCGCCACGTGAATATGGGAAGATCTCCATGCTGCGACGAGAATGGCCTTAAGAAAGGTCCCTGGACTCCCGAAGAAGATCAAAAGCTGGTTCAGCACATTGAGAAACATGGCCATGGAAGCTGGAGAGCCCTCCCTAAGCTAGCCGGTCTGAACAGATGTGGAAAAAGTTGTAGGCTAAGGTGGACTAACTATTTAAGGCCTGATATCAAGAGGGGAAAATTTTCTCAAGAAGAGGAGCAAACAATTATGCATCTCCATTCTATCCTTGGAAACAAATGGTCAGCAATTGCAACCCACCTTCCTGGCAGAACGGATAATGAGATAAAGAATTTCTGGAATACTCATTTAAAGAAAAAGTTGATTCAGATGGGTTTCGATCCAATGACTCACCAACCCAGAACTGACCTTGTTTCCAGCTTGCCCTATCTGCTAGCTTTGGCCAACATGACAGACCTTATGGATCATCAATCGTTGGATGAACATGCTATGATGTTGCAAGCAGAGGCAGTCCAGCTGGCAAAGCTTCAATACCTTCATTATCTAATCCAATCCTCAAACTCCTTAAGCTCCAACCACTATGATCAAAATGCCACCACAAGCAACATTGAACCTTTCACTTTGTTAAACTCAATCTCCAATGTGAAAGAGAATCCAGTCATGTTGCAACCAGATGCTCCTGCCTCATTTTCACATGGCATTGCTAGTTCTCAACCACTCCACCACCCAAACGTGCTACCTCAGCTTATAGACCCACAAGTCTCTTTCAGTTCTCAATCATGTTTGAATAGTGAGATGGGTCAAGGTACTAACTTTGCAATGGTAAGTCAAGGGGATCACACGGTTGATCATGACTCTTCCTGGACTATTCCATCTATTCCTCCGAATGCAATAGGTACATTAGCTAACAATCCAGGAGATGCTAGCAGCAGCACTTCTAGCTATGGAGGAGGACCCCAATCTTATTGGCCTGAACTATTTTTCGAGGACCCCATCATGCATGTGCTATCTTAG 1125 0.4498 MKSKKRGRESMGAMQTMTKEGAASSLRAWEGFLRQALIRHVNMGRSPCCDENGLKKGPWTPEEDQKLVQHIEKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTIMHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHQPRTDLVSSLPYLLALANMTDLMDHQSLDEHAMMLQAEAVQLAKLQYLHYLIQSSNSLSSNHYDQNATTSNIEPFTLLNSISNVKENPVMLQPDAPASFSHGIASSQPLHHPNVLPQLIDPQVSFSSQSCLNSEMGQGTNFAMVSQGDHTVDHDSSWTIPSIPPNAIGTLANNPGDASSSTSSYGGGPQSYWPELFFEDPIMHVLS 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01650 374 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 43 288 - -
Vian4g01650 374 Gene3D - 55 108 - -
Vian4g01650 374 ProSiteProfiles Myb-like domain profile. 51 103 IPR001005 -
Vian4g01650 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 104 158 IPR017930 -
Vian4g01650 374 CDD SANT 111 154 IPR001005 -
Vian4g01650 374 Gene3D - 111 158 - -
Vian4g01650 374 SMART sant 55 105 IPR001005 -
Vian4g01650 374 SMART sant 108 156 IPR001005 -
Vian4g01650 374 CDD SANT 58 103 IPR001005 -
Vian4g01650 374 MobiDBLite consensus disorder prediction 330 354 - -
Vian4g01650 374 ProSiteProfiles Myb-like domain profile. 104 154 IPR001005 -
Vian4g01650 374 FunFam Transcription factor MYB39 111 172 - -
Vian4g01650 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 103 IPR017930 -
Vian4g01650 374 FunFam MYB-related transcription factor 55 108 - -
Vian4g01650 374 SUPERFAMILY Homeodomain-like 53 150 IPR009057 -
Vian4g01650 374 Pfam Myb-like DNA-binding domain 109 154 IPR001005 -
Vian4g01650 374 Pfam Myb-like DNA-binding domain 56 103 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01650 Vian-Chr4 32408814 32411045 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01650 43 374 MYB Transcription Factor Family AT1G34670 55.946 1.13e-121 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian4g01650 Myb_DNA-binding 7.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01650 K09422 - gmx:100782792 606.29