Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01635 ATGGCTGTGCTTAGCGGGTTTTGGAGCCTGCCCCATAAGAATCTTGTGAAAAGGTTGGAAGGAGCTAAAGTTGGTGCTTGGATTGATTCAATGAGAGCCTCTTCCCCAACTCGTGCCAAATCAGAAAGCCAAGAAAAAAGATATTGGATTCTTTATCACCCTTCAGCTCTGAATACCTTCGAGCAAATAACATATAATTCCAAAGGCAAGCAGGTTGTAGTTTTTCTTGACTACGATGGAACACTCTCCCCTATCGTTACGGATCCGGACAAAGCCTTCATGAGTCGAAAGATGAGAGCGACGCTGAAGGGAATCGCAAGACATTTTCCCACAGCAATCGTGACCGGGAGGTGCAGGGACAAGGTCTATAACTTTGTGAAACTGGCAGAACTTTACTATGCCGGGAGCCATGGCATGGACATCAAGGGGCCAACAAAAAGCCGAAGTCCAAAGCAAGGTAATAATAAACCAGTACTGTTCCAACCCGCGAGTCAATTCCTACCCATGATCGATGAGGTGTACAAGGTGTTGTTAGAGAAAACAAAGTGTGTCCCAGGGGCTAAGGTCGAGAACAACAGGTTTTGCTTGTCCGTTCACTTTCGTTGTGTTGACGAAAAGAGCTGGGCACCCCTGGCGGAGAAAGTTAGATTGGTGCTCACTGAGTACCCACAACTTAAGCTAACCCAAGGCAGAAAAGTGCTAGAGATTCGTCCAACCATCAAATGGGACAAGGGAAAGGCTCTTGAATATTTGTTAGAATCATTAGGATACGAGAATTCGAGTGATGTATTTCCAATCTATATTGGTGATGATCGAACAGATGAGGATGCTTTTAAGGTTTTACGCAGTAGGGGTCAAGGAATTGGGATACTTGTTTCTAGTGTTGCAAAAGAAACAGATGCTTCCTACACCTTGCAAGATCCATCAGAGGTTGAGCAATTCTTGCGGAGATTGGTGGAATGGAAAAGATCCAGTAGTGTGAAGTGCACAGAGTTGTAG 999 0.4505 MAVLSGFWSLPHKNLVKRLEGAKVGAWIDSMRASSPTRAKSESQEKRYWILYHPSALNTFEQITYNSKGKQVVVFLDYDGTLSPIVTDPDKAFMSRKMRATLKGIARHFPTAIVTGRCRDKVYNFVKLAELYYAGSHGMDIKGPTKSRSPKQGNNKPVLFQPASQFLPMIDEVYKVLLEKTKCVPGAKVENNRFCLSVHFRCVDEKSWAPLAEKVRLVLTEYPQLKLTQGRKVLEIRPTIKWDKGKALEYLLESLGYENSSDVFPIYIGDDRTDEDAFKVLRSRGQGIGILVSSVAKETDASYTLQDPSEVEQFLRRLVEWKRSSSVKCTEL 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01635 332 NCBIfam HAD-IIB family hydrolase 74 283 IPR006379 -
Vian4g01635 332 Pfam Trehalose-phosphatase 75 309 IPR003337 GO:0003824|GO:0005992
Vian4g01635 332 Gene3D - 72 161 IPR023214 -
Vian4g01635 332 Gene3D - 187 330 IPR023214 -
Vian4g01635 332 FunFam Trehalose 6-phosphate phosphatase 169 328 - -
Vian4g01635 332 FunFam Trehalose 6-phosphate phosphatase 72 159 - -
Vian4g01635 332 CDD HAD_TPP 73 311 - -
Vian4g01635 332 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 19 327 IPR044651 GO:0004805|GO:0005992
Vian4g01635 332 SUPERFAMILY HAD-like 73 321 IPR036412 -
Vian4g01635 332 NCBIfam trehalose-phosphatase 69 319 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01635 Vian-Chr4 32107897 32109897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01635 68 318 Trehalose Biosynthesis Gene Families AT1G70290 26.394 1.75e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01635 K01087 - gmx:100788641 603.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01635 4 32107897 32109897 Vian4g01635 4 32107897 32109897 ECH