Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01633 ATGGCAGCTATGATGGGTTTTTACAGCAGCACAGAGTTTCAGCTTCCCTCAGATCCGTTCAGGGGTGAACTAATGGAAGTTCTTGAACCTTTTATGAAGAGTCCTTCCTCAACCCCTTCCTTTTCTTCCTCACCTTCAAACTCCTCTTTTCCTTCTACTTCTTACTCTCCTTCTCCCATCTACTTCCACTCTTCACCCTCCTTCCCTGTTATGTACTCAAACAACTGCTCCGCATCGATGACCCATGCATTTGCCGACGGGTTATCCCTATCCAACACCCAAAACATCATAGGCTTCGCGCATGGACAACCAACGTCTCTTCTCGGCCTCAACCACCTAACCCCCTCTCAGATCTCTCAGATCCAGGCTCAAATCCAGACCCAGAGCCAGCAGCAGCAGAATCCCAACACCCTCAACTTCCTCGGGACCAAGCCCGTCCCCATGAAGCACGTGGGCATGCCTCTGAAGCCCACGAAGCTTTATCGAGGGGTGCGGCAGAGGCACTGGGGGAAGTGGGTGGCTGAGATCAGACTCCCCAAGAATCGGACCAGGCTCTGGCTGGGAACATTCGACACCGCCGAGGAAGCCGCTCTGGCGTACGACAAGGCCGCGTACAAACTCCGAGGTGACTTCGCCAGGCTTAACTTCCCAAACCTCCGTCACCAGGGTTCCTCGGTGGGCGGAGGCTTCGGGGAGTACAAGCCGCTCCATTCCTCCGTTGACGCGAAGCTTCAGGCCATATGCGAAGGCCTGGCTGAGATGCAGAAACAGGGGAAGACCGAAAAGCCTCAGGGTTCGTCGAAGAGGTCACGGTCCAAAGTGGCTCCTCCGCCAGAGAAGGGTGATTCTGAGAAGGGTTCGGACGACAACACCAGCAACAAGTGTTGCAAGGTGGAAGCTTCCTCGTCTCCTGTTACGACGGAGAGCGAGGGGTCTGAAGGTTCTTCGCCTCTCTCGGATCTGACGTTTGCCGACGTGAGCGAGCCTCAGTGGGAAGGTGATTCAGATAGTTTTAATCTCTATAAGTACCCTTCTTATGAGATCGACTGGGATTCTCTGTGA 1062 0.5433 MAAMMGFYSSTEFQLPSDPFRGELMEVLEPFMKSPSSTPSFSSSPSNSSFPSTSYSPSPIYFHSSPSFPVMYSNNCSASMTHAFADGLSLSNTQNIIGFAHGQPTSLLGLNHLTPSQISQIQAQIQTQSQQQQNPNTLNFLGTKPVPMKHVGMPLKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSSVGGGFGEYKPLHSSVDAKLQAICEGLAEMQKQGKTEKPQGSSKRSRSKVAPPPEKGDSEKGSDDNTSNKCCKVEASSSPVTTESEGSEGSSPLSDLTFADVSEPQWEGDSDSFNLYKYPSYEIDWDSL 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01633 353 Gene3D AP2/ERF domain 160 218 IPR036955 GO:0003700|GO:0006355
Vian4g01633 353 SMART rav1_2 160 223 IPR001471 GO:0003700|GO:0006355
Vian4g01633 353 FunFam Ethylene-responsive transcription factor 2 159 218 - -
Vian4g01633 353 Pfam AP2 domain 161 209 IPR001471 GO:0003700|GO:0006355
Vian4g01633 353 MobiDBLite consensus disorder prediction 262 292 - -
Vian4g01633 353 CDD AP2 159 219 IPR001471 GO:0003700|GO:0006355
Vian4g01633 353 SUPERFAMILY DNA-binding domain 160 218 IPR016177 GO:0003677
Vian4g01633 353 PRINTS Ethylene responsive element binding protein signature 161 172 IPR001471 GO:0003700|GO:0006355
Vian4g01633 353 PRINTS Ethylene responsive element binding protein signature 183 199 IPR001471 GO:0003700|GO:0006355
Vian4g01633 353 ProSiteProfiles AP2/ERF domain profile. 160 217 IPR001471 GO:0003700|GO:0006355
Vian4g01633 353 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 8 353 - -
Vian4g01633 353 MobiDBLite consensus disorder prediction 293 323 - -
Vian4g01633 353 MobiDBLite consensus disorder prediction 255 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01633 Vian-Chr4 32087394 32088455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01633 1 353 AP2-EREBP Transcription Factor Family AT1G78080 53.117 8.61e-98 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian4g01633 AP2 8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01633 K09286 - gmx:732559 432.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01633 4 32087394 32088455 Vian4g01633 4 32087394 32088455 ECH