Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01612 ATGTCCTCTTCTTTGTCGTCGTCCAATTCCCCCTGCGCCGCGTGCAAGATTCAGCGCCGGAAGTGCACGCAGGAGTGCGTCTTCGCGCCGTATTTTCCGCCGGACAACCCGCAGCGCTTTGCCTACGTGCACAAGGTCTTCGGTGCCAGCAACGTCGCAAAGCTTCTCAACGAACTCAACGCGGCGCAGCGCGAGGACGCGGTTAAGTCCCTCGCCTACGAGGCCGAGGCGCGTCTGCGGGACCCCGTCTACGGCTGCGTCGGTCTCATCTCCATCCTCCAGCACCGCCTCAAGCAGTTGCAGACCGAGCTCCACCACGCCAAGAAGGAACTCGCCTCCTACATCGGACCTCACGCCATGCTTCCTCCTCCTCCTCCGCCTCCGCCGCAACCGCGCACCTTCTCTCTCTTTCCCTTCAAAGCGGCGCCTCCTCCTCCTCATCAGGATGTTTTCGCCTTCACTGACGACGGTGCTTCCGCTTCTCACTCTTCCCACGCCGCCTTCAACCACCTCGCTGTTCTCTCGCCTACCCTCGCCTCCGATCACACCTTCCCTCACGCACCCACCCATCCTCTCGCACTTCCGCACCACCAACACCTAATGCTCTCCCCTATGCAATCCAAGCCCCAGACCGACCCTGAGTTTGGAAATCCAGTTTTAAGGGTTTGCTCAAAGCTTAATTGTTCTGAATGGAAGGCAAAAGGGTGTAAAGAAGGAAGAGTGAGAAAGTTGCAGAAAGAGGAAGGAAAGTGGGGAGGGAGACAAGGTAGGGGTATATGA 780 0.5859 MSSSLSSSNSPCAACKIQRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELNAAQREDAVKSLAYEAEARLRDPVYGCVGLISILQHRLKQLQTELHHAKKELASYIGPHAMLPPPPPPPPQPRTFSLFPFKAAPPPPHQDVFAFTDDGASASHSSHAAFNHLAVLSPTLASDHTFPHAPTHPLALPHHQHLMLSPMQSKPQTDPEFGNPVLRVCSKLNCSEWKAKGCKEGRVRKLQKEEGKWGGRQGRGI 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01612 259 Coils Coil 90 110 - -
Vian4g01612 259 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Vian4g01612 259 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Vian4g01612 259 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01612 Vian-Chr4 31719949 31721341 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01612 5 132 AS2 family AT5G66870 76.515 8.25e-67 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vian4g01612 LOB 3.7e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01612 - - gmx:100819170 311.612