Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01593 ATGCCACGACAATCGCCACCGTCACAGCCGCAGCAGCCCAGCGAACTGGAGCCGGCCATATGGCAAGCCTGTGCTGGACCGTCTGTGGAAATCCCGAAGCCAAATTCTATGGTTTACTACTTTCCTCAGGGACACTTTGATCAAGCGTCTTCGGCACCCAAGAATCTCTCCAGTCACCTTCTTGCCAAACCCTTCATTATCTGCAGTGTTGTCTCGGTTAATTTTCTTGCCGATCCTCTTACCGACGAGGTTTTCACCAAGATGGTTCTCCAACCTGTTGGTAACAACCTTCCTGTGGAATCCTTCCATACTCCTGCCTTTGCTCCTCCTGCTGTTGCTCCTCCGCCAAATGACGACAACGAGGTTGTTTCGTTCGCTAAGATTCTCACGCCGTCTGATGCCAATAACGGCGGGGGCTTCTCCGTGCCTAGGTTCTGCGCCGACTCTGTCTTTCCGAAGCTGAACTTTGGCGCCGACCCGCCCGTGCAGAACCTCTCTGTCACGGACGTGCACGGCTTCACCTGGGAGTTCCGCCACATTTATCGTGGGACTCCACGCCGCCACTTGCTCACCACTGGCTGGAGCACGTTCGTCAACAACAAGAAACTGGTAGCTGGAGACTCTGTCCTGTTTATGAAGCGTGCCGAACGTTTGTTTGTCGGAATTCGTCGCGCCACACGTTTCTCTTCTGAAAGGGCCAACTGCCCGAAACTCATGTTAATTGAGGAGGAGGAGGACGAGGAAGAAGACGAAGAGAAGATGAAGAGAGTTTTCAAGAGGGACGGGAAGGGGAAACTGACGGCTAAGGTTGTTGTGGAAGCTGCAGAATTGGCTGCGCGACAAATGAAGTTTGAGGTTGTTTATTATCCCAAGGCTGGTTGGTCTGAGTTCGTGGTGAAGATTGAGGTGGTGGATGCAGCTATGAGGATTGCATGGAGCGAAGGAATGAGAGTGAAGATGTCTGTGGAGACAGACGATTCATCCAGGATGACTTGGTTTCAGGGTACCGTCTCTGCTGTCTCATCTCACGATAATGGCCAATGGTGCAGTTCGCCTTGGCGCATGCTTCAGATGTTCTACGTTGTTGAGGTTACATGGGATGAACCTGAAGGGCCGCGGAATGGAAAATGGGTTAGTCCTTGGCAGGTGGAACTTGTTTCCCCCCCACCTGCCCTTCATCCAGCATTCCCCCCAGCTAAAAGGCTCAGAACTGCTAATGGTTATGGGGTGTTGACTAATGGAGAGGGAGGAACCTTTTCTGTGGCCGGAGTCACTAATTCAGCAATGGTACAACTGAATCCGGCATATTTGGGTTATAGTACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATGTATTTTCTGCATCAAGTTTTCCCAGTTATCCAAGGGACTTGTCTCATCTGTGTATCGATAATTCCTTTGGAAACAACACATTTTCAAGGCAGAAAAATTTGCCGACAGAACTACATGTTGGCGGCAACTCTCAATCTGATGAATTATCACCTGATAGTAGTTTCCATTCCTGTGTCACAGACACTCTTGGGAATACCAACAACTCAATAAAACCTGCGCCCGATTCATTTCAGCTATTTGGTGCAGTCATTCGGAAAGAACAACCTGTTCAAAATGATTTAACAGGCACTGGTTGCGCTATCACAGGAGATAAAGCCCCTGGCAGATGA 1686 0.5012 MPRQSPPSQPQQPSELEPAIWQACAGPSVEIPKPNSMVYYFPQGHFDQASSAPKNLSSHLLAKPFIICSVVSVNFLADPLTDEVFTKMVLQPVGNNLPVESFHTPAFAPPAVAPPPNDDNEVVSFAKILTPSDANNGGGFSVPRFCADSVFPKLNFGADPPVQNLSVTDVHGFTWEFRHIYRGTPRRHLLTTGWSTFVNNKKLVAGDSVLFMKRAERLFVGIRRATRFSSERANCPKLMLIEEEEDEEEDEEKMKRVFKRDGKGKLTAKVVVEAAELAARQMKFEVVYYPKAGWSEFVVKIEVVDAAMRIAWSEGMRVKMSVETDDSSRMTWFQGTVSAVSSHDNGQWCSSPWRMLQMFYVVEVTWDEPEGPRNGKWVSPWQVELVSPPPALHPAFPPAKRLRTANGYGVLTNGEGGTFSVAGVTNSAMVQLNPAYLGYSTFPAGMQGARHDVFSASSFPSYPRDLSHLCIDNSFGNNTFSRQKNLPTELHVGGNSQSDELSPDSSFHSCVTDTLGNTNNSIKPAPDSFQLFGAVIRKEQPVQNDLTGTGCAITGDKAPGR 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01593 561 Pfam Auxin response factor 274 357 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vian4g01593 561 SUPERFAMILY DNA-binding pseudobarrel domain 120 230 IPR015300 -
Vian4g01593 561 CDD B3_DNA 124 224 IPR003340 GO:0003677
Vian4g01593 561 SMART B3_2 125 226 IPR003340 GO:0003677
Vian4g01593 561 ProSiteProfiles B3 DNA-binding domain profile. 125 226 IPR003340 GO:0003677
Vian4g01593 561 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 540 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vian4g01593 561 Gene3D - 312 388 - -
Vian4g01593 561 Pfam B3 DNA binding domain 125 225 IPR003340 GO:0003677
Vian4g01593 561 FunFam Auxin response factor 123 226 - -
Vian4g01593 561 Gene3D - 122 226 IPR015300 -
Vian4g01593 561 Coils Coil 241 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01593 Vian-Chr4 31516397 31519108 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01593 15 557 B3 DNA Binding Superfamily AT1G77850 45.438 1.87e-147 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vian4g01593 B3 8.1e-21 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01593 4 31516397 31519108 Vian4g01593 4 31516397 31519108 ECH