Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01589 ATGCTCCGCTTCCTGTGTACCTTGTTGTTGCCGGCTATGACCGGGGGACGATGTCTCCCGTTGAAGGACATGACGGAGGAAGGGGATGCCGCTGCCGTGAGGAGACCCTATCGGTCTGATTTTGTGGCGGAAATTACTCGTGATTTTTCCGTAAGTGAAATTGATTACTTATCCCAGGCTAGGAAAGCTCTCTCAGAAAGTTCTCCCTTTGATGTTGCCGAAGAAACTTCGACTTCTGCTGCGCTGACGCTGCCCAGTGGATTGGCTGGCCTGCTGAACAGACAGACTGATAACAGGAGACGTCCGAAGAAGTCCCATTCTGGTGGGCAAAAGAGGAAATCTTCGACTAGGGCAAACCAGAAGAAACCTGAGGATTCTAACATTTGGATTGAGACTGAGGAGTACTTTAGAGACCTAACCTTGGCAGATATTGACTTCTTGCTTGAGTTCTCTCGCACTTCTAGTTTAGCTTCTCAGGACTTCTCCATTCCATTATTGGGAAATATTCCGACCTACAATGCAGTTCGAAGTTATAGCGAGAAGGAAATGGAGCCTGCTCCTAAAGTCAGCGTAGGAGTCGGTGGTGAGGATGAAAAGAAGGGTGATTTAGTGGGTAGTGAGGATGCAAAGAAGGTTGGTGAAGCTGTGGAAAGTGAGGATGGATTGTTGGTAATTGAGGCAATTGATGATGCTGTTGTTGAACAACCATGTCCTCGGGATGACAGGAATCAAGACAGTTCTGATTCTGCTATCAGTTTAGAATGGTTTTTGGGACGTAGGAATAAACTTTCTTTAACTTCTCAGCGTCCCTCCAAGAAAAGGAGGCTTTTGGGCGTTGAGGCTGGTTTGGAGAAAGTTATAATGTCTTGTCCTTATGACGAGGGTCAACCGTTTTGCCACTACTGTGGCAGAGGAGACACTGGCAGTGACTCCAATAGGTTAATTGTATGCGCAGCTTGTAAAATGGCAGTTCACGGGAAGTGCTATGGGGTGCATGAGGGTGTGGATGAGGCTTGGCTGTGCTCCTGGTGCAAACAAATGGGTGATGTTGATGAATCAGTGAATCCTTGTGTTCTTTGTCCAAAGAAGGGTGGTGCATTAAAACCAGTTTATAGCAGTGTGAAAGGTGCTGGCTCAGCTGCATTTGTGCACTTATTCTGCTCTCTGTGGATGCCTGAGGTTTATATAGATGATCTGGAGAAGATGGAACCTGTTATGAATGTGGGGGAAGTCAAGGAAACCAGGAAGAAATTAGTGTGTAGTGTTTGCAAATCAAAGTGTGGTGCATGTGTTCGGTGCAGCCATGGAAGCTGCAGAACTTCTTTCCACCCTTCATGTGCAAGGGATGCGAGACATAGGATGGAGGTTTGGGCAAAGTATGGTAATGATAATGTTGAGTTGCGGGCTTTTTGCTTGAAACACTCGGATCTACCAGAGAGCAAAAGCATCTTGCCACAGGAAGCCTTTATAGAGGTTAGAAATGAATTATCAGAAGCCAGTGACCTTCCAGTGACATTGCCAGTGAGTGGTGAACACAACTTGAGAGATTGCAGGAATGGAGGATTAGTTTCTGACAGTAATCCAGACAAATTGAACCATTGTGACGAACCACCAGATGGAGGACTACCTGATTGCAGGTTAAGTGATCACATGTTGGGATGTGGTGCTGTGCCCCAACAAAATGTTGAAGTGGTAGAGAGAGGGAATGAGAATGCTGATGGATCTGATTCTAACAGTTTTGCTCTAGTTTTGAAGAAGTTGATTGATCGAGGAAAAGTTAATGTAAAAGATGTAGCATTGGAGATTGGCATTTCACCAGATACATTAACTGCAAATACAAATGAAGCTTATATGGCCCCTGATGTCCGACACAAAATAGTGAATTGGCTAAAAGGCCATGTATATTCCGGTGCATTTCAGAAGGGTTTAAAGGTCAAATTCAAACCAGCCAATGCATCCAAAATTGATAGTGGAGCCACGGATGGCTCTGATACTTTACCAATATCAGACTCAGGTTTGCTGGATCCTGTTGCTGTTAAGTCGGTTCCGCCAAGGAGGAGAACAACCAATAACATTAGGATTTTGAAGGATAATAAAGTGATATGTTCATCTGAGGGGGTTACAAGTGAGAATGGGATGCCGGTACACATGTGCAGAATAGGTCAGTCCAACTGCGAGAATCCAACAAGTTCCAATGAAGCATCCATCCCTAATGCAACAGAAACGAACTTACCCAAGTATGAGGATGTTTTTCAAGAAGTTCAAGAGAATGCTGATAACCCTCACAAATCCTGCTTATCTGGGTACGTTTCAGATGACAAGTGTAGTATTTGTTTGCAAAATCCTTCTACGCTTTCATATCAGCAATTTCTTGTTCATTCTGCTTCAGAACCATCTGATTCTGGTTTCATAAAGGGTGCAATCTCTAGTTACATTCATCCATTCATCAACAAGAAATTGCTGCAGATTCAGGATGGGGTGCCCTTGGAGAATGTTATATGTTCAACTGACAAGGGAAATTCGGGTTTGGTTGAATCCTTTGGAGCTAGTGGCTGCTCAAATAGCCAAAATCAGAACTTAACTTCCAGTGAAATATCAAAGCCTGACGAAGTAAAGAGGGAGCAATTGGTTAGGACTAAAAAAGTGGAACTTTTGGAATTTTCTCCCCAAGATGAGTTGGAGGGGGAACTTGTTTATTTTCAATATAGGTTATTGCAGAATGTGGTTGCAAAAAGAAGGCATATTGATAATTTAATCTATAGTGTTGCAAAGAGTTTACCACATGAGATTGATAAGGCACATCAACAAAGATGGGATGATGTTATTGTTAATCAATATCTACGTGATCTTAGAGAGGCAAAAAAGCAGGGCAGAAAAGAAAGAAAGCACAAGGAAGCACAGGCAGTATTGGCTGCTGCAACTGCTGCTGCAGCAGCATCTTCTAGGTCATTCCGGAAAGACACATTAGATGAATCTATGCAACAGGAGAATTTTTTAAAATCAGACCATTTAAATGGAAGGGCGGGTGCTTGTTCTCAACCAATGCCTCGAGCTAAAGAGACACTTTCAAGAGTAGCTGTGACTAGAACTTCATCAGAGAAATATTCGGATTTTTGCATGCCAACCTCAGATTTTTCTAAGGAGCAATGTAAATCATGTGATATTTGTAGACGATCAGAGACTATTTTAAACCCTATCCTAGTCTGCTCTGGTTGTAAGGTTTCAGTCCACTTAGATTGCTATCGTAGTGTGAAAGAAACGACAGGTCCGTGGTACTGTGAGTTATGTGAAGATTTGTCATCTAGAAGCTCTGAGGCATCTGCCATCAACTTTTGGGAGAAACCTTATATTAGTGTGAAATGTGCTCTCTGTGGTGGTACTACTGGTGCTTTTAGGAAGTCTTCTGATGGTCAATGGATTCATGCTTTCTGTGCTGAGTGGGTTTTTGAGTCTACGTTCAGAAGAGGACAAATAGATGCTGTGGAAGGAATGGAAAGTGTGCCAAAAGGCGTTGACACTTGTTGCATCTGCCATAGCAAGAATGGTGTATGCATGAAGTGCTGCTATGGGCATTGTCAGACCACATTCCACCCATCCTGTGCTAGAAGTGCTGGTTTGTACATGAATGCAAGGACTGCTGGTGGCAAGGTTCAACACAAGGCTTACTGTGAAAAACATAGTTTGGAGCAAAAAGCGAAGGCTGAAAATCAAAAACATGGAATTGAAGAGTTAAAAAGTATCAGGCAAATTAGGGTTGAACTAGAGAGATTACGTCTCCTTTGTGAAAGAATTGTCAAACGTGAAAAAATAAAGCGGGAATTAGTACTATGTTCACATGACATACTTGCCTTTAAGAGAGATAATGTTGCGAGGTCTGTGCTAGTTCATAGCCCTTTCATCCTTCCTGATGGTAGTTCAGAATCAGCTACAACGTCTCTAAAAGGGAACACAGAGGGATACAGATCATGCAGTGAACCTCCACAAAGATCAGATGATGTTACTGTTGACAGTTCTATTTCTGCTAAGCGCCGTGTCAGAGTTGCCATATCTATGGATGCAGACCCAAAATTGGATGATGACTGTTCAACCTCCCAGAGCAAATATAACCACAAGATTCCAGAAAGAACACAATTTTCTGGCAAGAAGATTCCTCATAGAGCTGCTGCATCACGAAATATTTTGGATGAAGGTGGATGGAGATCCAAATCTAGAAAGCATGCCGAAACATTTGGAAAAGAGCTTGTTATGACGTCAGATGAAGCGTCTATGAAGAATTCAAGGCTGCCAAAAGGATATGCATATGTTCCTGCTGATTGTCTGTCAAATGACAAGCACTCTAACGAGGATATGTATGCTAGTGGGCCTGTGGAGCATGACAGATAG 4383 0.4298 MLRFLCTLLLPAMTGGRCLPLKDMTEEGDAAAVRRPYRSDFVAEITRDFSVSEIDYLSQARKALSESSPFDVAEETSTSAALTLPSGLAGLLNRQTDNRRRPKKSHSGGQKRKSSTRANQKKPEDSNIWIETEEYFRDLTLADIDFLLEFSRTSSLASQDFSIPLLGNIPTYNAVRSYSEKEMEPAPKVSVGVGGEDEKKGDLVGSEDAKKVGEAVESEDGLLVIEAIDDAVVEQPCPRDDRNQDSSDSAISLEWFLGRRNKLSLTSQRPSKKRRLLGVEAGLEKVIMSCPYDEGQPFCHYCGRGDTGSDSNRLIVCAACKMAVHGKCYGVHEGVDEAWLCSWCKQMGDVDESVNPCVLCPKKGGALKPVYSSVKGAGSAAFVHLFCSLWMPEVYIDDLEKMEPVMNVGEVKETRKKLVCSVCKSKCGACVRCSHGSCRTSFHPSCARDARHRMEVWAKYGNDNVELRAFCLKHSDLPESKSILPQEAFIEVRNELSEASDLPVTLPVSGEHNLRDCRNGGLVSDSNPDKLNHCDEPPDGGLPDCRLSDHMLGCGAVPQQNVEVVERGNENADGSDSNSFALVLKKLIDRGKVNVKDVALEIGISPDTLTANTNEAYMAPDVRHKIVNWLKGHVYSGAFQKGLKVKFKPANASKIDSGATDGSDTLPISDSGLLDPVAVKSVPPRRRTTNNIRILKDNKVICSSEGVTSENGMPVHMCRIGQSNCENPTSSNEASIPNATETNLPKYEDVFQEVQENADNPHKSCLSGYVSDDKCSICLQNPSTLSYQQFLVHSASEPSDSGFIKGAISSYIHPFINKKLLQIQDGVPLENVICSTDKGNSGLVESFGASGCSNSQNQNLTSSEISKPDEVKREQLVRTKKVELLEFSPQDELEGELVYFQYRLLQNVVAKRRHIDNLIYSVAKSLPHEIDKAHQQRWDDVIVNQYLRDLREAKKQGRKERKHKEAQAVLAAATAAAAASSRSFRKDTLDESMQQENFLKSDHLNGRAGACSQPMPRAKETLSRVAVTRTSSEKYSDFCMPTSDFSKEQCKSCDICRRSETILNPILVCSGCKVSVHLDCYRSVKETTGPWYCELCEDLSSRSSEASAINFWEKPYISVKCALCGGTTGAFRKSSDGQWIHAFCAEWVFESTFRRGQIDAVEGMESVPKGVDTCCICHSKNGVCMKCCYGHCQTTFHPSCARSAGLYMNARTAGGKVQHKAYCEKHSLEQKAKAENQKHGIEELKSIRQIRVELERLRLLCERIVKREKIKRELVLCSHDILAFKRDNVARSVLVHSPFILPDGSSESATTSLKGNTEGYRSCSEPPQRSDDVTVDSSISAKRRVRVAISMDADPKLDDDCSTSQSKYNHKIPERTQFSGKKIPHRAAASRNILDEGGWRSKSRKHAETFGKELVMTSDEASMKNSRLPKGYAYVPADCLSNDKHSNEDMYASGPVEHDR 1460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01589 1460 SUPERFAMILY FYVE/PHD zinc finger 1044 1097 IPR011011 -
Vian4g01589 1460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1041 1102 IPR013083 -
Vian4g01589 1460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 290 349 IPR013083 -
Vian4g01589 1460 CDD ePHD 1121 1226 - -
Vian4g01589 1460 ProSiteProfiles Zinc finger PHD-type profile. 1050 1099 IPR019787 -
Vian4g01589 1460 MobiDBLite consensus disorder prediction 1305 1335 - -
Vian4g01589 1460 MobiDBLite consensus disorder prediction 1305 1337 - -
Vian4g01589 1460 Coils Coil 947 967 - -
Vian4g01589 1460 ProSiteProfiles Zinc finger PHD-type profile. 296 347 IPR019787 -
Vian4g01589 1460 PANTHER PHD FINGER PROTEINS 113 983 - -
Vian4g01589 1460 SMART PHD_3 1052 1097 IPR001965 -
Vian4g01589 1460 SMART PHD_3 1173 1227 IPR001965 -
Vian4g01589 1460 SMART PHD_3 298 345 IPR001965 -
Vian4g01589 1460 SMART PHD_3 419 475 IPR001965 -
Vian4g01589 1460 MobiDBLite consensus disorder prediction 1442 1460 - -
Vian4g01589 1460 Pfam PHD-finger 312 345 - -
Vian4g01589 1460 Pfam PHD-finger 1064 1097 - -
Vian4g01589 1460 Pfam PHD-zinc-finger like domain 356 474 - -
Vian4g01589 1460 Pfam PHD-zinc-finger like domain 1119 1226 - -
Vian4g01589 1460 ProSiteProfiles Extended PHD (ePHD) domain profile. 354 475 IPR034732 -
Vian4g01589 1460 MobiDBLite consensus disorder prediction 1439 1460 - -
Vian4g01589 1460 ProSiteProfiles Extended PHD (ePHD) domain profile. 1118 1227 IPR034732 -
Vian4g01589 1460 MobiDBLite consensus disorder prediction 91 124 - -
Vian4g01589 1460 SUPERFAMILY FYVE/PHD zinc finger 287 345 IPR011011 -
Vian4g01589 1460 ProSitePatterns Zinc finger PHD-type signature. 299 344 IPR019786 -
Vian4g01589 1460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1116 1228 IPR013083 -
Vian4g01589 1460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 350 477 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01589 Vian-Chr4 31455366 31468842 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01589 293 481 C2H2 Transcription Factor Family AT3G14740 30.208 4.32e-17 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vian4g01589 zf-HC5HC2H_2 5.4e-24 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01589 - - vum:124846061 2789.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01589 4 31455366 31468842 Vian4g01589 4 31455366 31468842 ECH