Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01579 ATGGAGAATTTGCAAAGTGCTCTTAAAGATTATAGCTTATCAGTTTCCACCGTCCCAGAAAAGGGTCGTTCTCTCTTCGCTTCAAGGGATTTCTATCCAGGGGATGTGATTATAGGCCAAGAACCTTACGTTTGTGTTCCAAACAACTCCTCACTTTCCACCCCCAAAAGGTGTGATGGATGTTTCATTACATCTGATGTCCTTAGAAGGTGCTCACGTTGCCATGTTGCATACTATTGCGGAACCGCATGTCAGAGGTCAGAGTGGAAGCTGCATCGCCTTGAGTGTGAGGTCGTCTCAAGGCTTGACAAGGATAAGAGAAAATCTGTCACGCCATCCATACGGCTGATGGTGAGACTTTACCTACGGAGGAAGTTGCAAGATGATAAGGTCACCCCAAGCACTGCTATGGACAACTACAACTTGGTGGAGGCATTAGTGGCTCACATGTCTGATATCACAGAGGAGCAGCTGGTGCTTTATGCACAGATGGCTAATCTTGTATATTCCATATTGAAATGGCCGGAAATCAATATAAAAGAGATTGCAGAAAATTTTTCTAAGTTTGCATGTAATGCTCATACTATTTGTGACAATGAGTTAAGACCTGTGGGAACAGGATTGTATCCCGTAATTTCCATAATCAATCATAGTTGTTTGCCCAATTCTGTGTTGGTTTTTGAGGGAAGGTCAGCATTGGTACGTGCTGTGCAACATATACCCGCAGGTACTGAGGTAGTGATAAGTTATATAGAGACTGCTGGAAGCACAATAACTCGACAGAAGGCTCTCAAAGAGCAGTATCTATTCACTTGTACATGTCCCCGCTGTTCTAAAATGGGCCAGAAAGATGATATACAAGAAAGTGAAATTTTAGAAGGATATAGATGCAAAAATGAAAAATGTGGTGGTTTCTTGCTTCGAACAACCGATGGGAAAGGATTTCAATGCCAAGGTTGCCAACTAGTTATGGGCAAGGAGGAGATAAAGGAAATTATAACTGAAATTGAATTGCTATCTGAAGAAGCAGCTTCTAAGTCTTCTTTCTCTTGCAGTTATCAAGAAGTTATTTCCATTTATAAAAAGATTGAGAAACTGCAAACAAAGCTCTATCATCCTTTCTCAATTAATTTGATGCAAACTCGAGAGAAGATTTTGAAGTCATTAATGGAGCTGGAACACTGGACTGAAGCTTTAGCATATTGCAAATTGACCATTCCATTCTATGAAAAAGTGTATCCATCTGTTCACCCTCTGCTTGGATTGCAATATTATACTTGTGGAAAACTAGAATGGTATTTGGGAGAGACAGAGGAAGCTGTTAAATCACTGACCAAGGCGGTGGATATACTACGGATTACTCATGGCACAAATACACGTTTCATGAAGGACCTCTTGATGAAGTTGGAAGAAGCCCGTGCTGAAGCCTCTTGCAAATGGTCCTCCATACACTGCTAG 1458 0.4129 MENLQSALKDYSLSVSTVPEKGRSLFASRDFYPGDVIIGQEPYVCVPNNSSLSTPKRCDGCFITSDVLRRCSRCHVAYYCGTACQRSEWKLHRLECEVVSRLDKDKRKSVTPSIRLMVRLYLRRKLQDDKVTPSTAMDNYNLVEALVAHMSDITEEQLVLYAQMANLVYSILKWPEINIKEIAENFSKFACNAHTICDNELRPVGTGLYPVISIINHSCLPNSVLVFEGRSALVRAVQHIPAGTEVVISYIETAGSTITRQKALKEQYLFTCTCPRCSKMGQKDDIQESEILEGYRCKNEKCGGFLLRTTDGKGFQCQGCQLVMGKEEIKEIITEIELLSEEAASKSSFSCSYQEVISIYKKIEKLQTKLYHPFSINLMQTREKILKSLMELEHWTEALAYCKLTIPFYEKVYPSVHPLLGLQYYTCGKLEWYLGETEEAVKSLTKAVDILRITHGTNTRFMKDLLMKLEEARAEASCKWSSIHC 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01579 485 Pfam SET domain 22 250 IPR001214 GO:0005515
Vian4g01579 485 Gene3D SET domain 24 277 IPR046341 -
Vian4g01579 485 ProSiteProfiles Zinc finger MYND-type profile. 58 96 IPR002893 -
Vian4g01579 485 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 15 471 - -
Vian4g01579 485 ProSiteProfiles SET domain profile. 11 251 IPR001214 GO:0005515
Vian4g01579 485 SUPERFAMILY SET domain 12 250 IPR046341 -
Vian4g01579 485 SUPERFAMILY TPR-like 353 450 IPR011990 GO:0005515
Vian4g01579 485 Gene3D Tetratricopeptide repeat domain 405 484 IPR011990 GO:0005515
Vian4g01579 485 Pfam MYND finger 58 96 IPR002893 -
Vian4g01579 485 Gene3D - 57 108 - -
Vian4g01579 485 Gene3D - 109 193 - -
Vian4g01579 485 SMART set_7 11 257 IPR001214 GO:0005515
Vian4g01579 485 ProSitePatterns Zinc finger MYND-type signature. 58 96 IPR002893 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vian4g01579 SET 7.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01579 K11426 - gmx:100789518 799.66