Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01578 ATGTCCCTGCTGAGTAGTTGTCTTTGCCCTCCACTGAGATCTATCACTTTCCAGTTTTCTAACATACGCATTTCTTCCATCACTGATTTGCTTTGTCGTTATTCTGAGCTCAAGAAGGTGGACTTTTTCGGGCTAAACGCATTGCACCATTTGCAAGATTTACAAATGTTTTTTAAACTCAAAGAGAAAGAAGAGAGCACGAAATTTGATCTCAAAAGATTCTCTCTGGTTTCCAGAGCTCGAATTGCAAATCATGCAAGGGTCTCAGTCTACTTATATTCAGAAGATGAAGGAGTGGAGAGGGACGAAGTGTTAGGAGAGGAGGGCGAAGTAGGTGTTGGCGGGGTCGTCAAGAAGGGCAGTGGCGAGGAGGCGGCACGTGACGAAGATGGAGGTGTAGTTGAGATGTTAGAAGGTTCAATGCAGTCCAATAGCATAAGGCCAAGGCGCACGCTACTTCCACAACGAAAGCTATCTAACACACCCTCCGACCCCACCAATTCTCAAGAACAAGCTTCTTCCAATGTCTCACTCAACGCCCTCGTCCCTTCCCAAAACCTAGACGTTCAGAAGAAAGATCAATTTTCAGTTCACACAAATTCTACTGCGCAGGATGCTAAGGCCACCAATGAGTTGGAGAATTTATCGTCTCACATGGGTTCGCTTGGATTCGCAGAAATGGAGTGGGTTGAAGGCAACCAAATTGAAGCATCGTCGTCATCATCATTGCTAGGATGCAACCAGAAGGGGGATGTTCAGCAGGCTGGCTTTGACGCGAGTTTGAGATGTGATAGTGGAGTGAGTTCCGTGTTGCCAAAGAGAAGTGTGGTTACTCAGGATCATTTGCAGCAATTCAGTAGCTTTTTGAGTCAGCCAGCTACCCACTCTTCGGTTTTGGGACCTTCATGTGCTACAACAACCTCAGTTCATTCAACTTCGGCGCCTATGCTAAATTCAACAACACGATATTCTCATTCGCATCTAGACGGTGGCTCAAATGTGACTGCTGAGCCTTTTGGGGAGGTTAATGCTAATCCTCGTCCTGTAACTGAAGGGGTTGTGAAATCAGTAAATGTTTTCCAAAAGGAAACCAACAGAGTGTTGGTGGATCGGGGAGCAGAAGCTGAAGTGCCGGCCTCTGATCTTGGTATTGGTGATGCAGAATTGGTGTCTAAGGAGAGCAGTCGATCTACGGAGCAACAAGGGGGGGTACTACCTCCCACATCCACAACCACATGTTCAGATGTGAAGTTGGAGTCTTCTAAGGTAGAAAAGCGAGAGAAGATTGGAAGTAGTAAAGGTGCATCAGCTCCCCGTAAGAGGACTTATGACCCTGATTTGTTTTTTAAAGTTAATGGAAAGCTTTACCAACGTCTTGGCAAGATAGGTAGTGGTGGAAGCAGTGAGGTACACAAAGTGATTTCATCGGACTGTAGGATATTTGCCCTTAAAAAGATCAAGCTCAAGGGTCGTGATTATGCTACTGCATTTGGGTTTTGTCAAGAGATCGAGTATCTCAATAGGCTGAAAGGAAAGGATAACATCATACAGCTCATAGATTATGAGGTGACAGACAAGGCATTGCTTGAGGAAGTTATGAAAGGCTCTTTAAGTAATAGAGATGGCCGGGTCAAGGATGATGGATGTATATACATGGTCCTTGAATATGGAGAAATTGATTTGGCTCACATGTTGTCTCAGAAGTGGAAGGAACTGGATGGGAGCCACCGGACCATAGATGAGAACTGGCTTCGATTTTATTGGCAGCAAATTCTTCTAGCTGTCAACACTATTCATGAGGAACGTATTGTGCACTCAGACTTGAAGCCAGCTAACTTCCTTCTTGTCAAAGGTTCCCTAAAACTAATTGATTTTGGTATAGCCAAAGCAATAATGAATGACACAACCAACATCCAACGGGATTCACAGGTGGGTACACTTAGTTACATGTCTCCAGAGGCATTTATGTGTAATGAGACTGATGCGAACGGAAACATCATAAAGTGTGGCCGGTCATCAGATATATGGTCCCTGGGTTGCATCCTTTATCAAATGGTATATGGGAGAACGCCTTTTTCTGATTACAAGACATTTTGGGCCAAATTCAAGGTCATAACAGATCCACATCATGAAATTACGTATGAACCAGTTTCAAACCCATGGCTTTTGGATCTTATGATGAGGTGTTTAACATGGGACCGCAATCAAAGGTGGAGAATACCTCAGCTACTGGAACATCCTTTTCTTGTTCCACCTGTACCATCTCATCCATCTATGCCCCAAGATAATAATAGCTGTAAATTGCTACAACATATTTCTGAAACTTGTACATATGACCCAGAGGTATCTGAACTGTGTAGTCAGCTCCAACGGCTTCTAAGTGATTCAGTCGACAAAACAACTCACTCACTAAATTCACGAGATCAACAACTAAAACTGCTGTCCCAAATGTCAGATATGTGTATTCAGCTGCATGAACGTTTGAGAAATACTGGAAACAAGTAG 2505 0.4387 MSLLSSCLCPPLRSITFQFSNIRISSITDLLCRYSELKKVDFFGLNALHHLQDLQMFFKLKEKEESTKFDLKRFSLVSRARIANHARVSVYLYSEDEGVERDEVLGEEGEVGVGGVVKKGSGEEAARDEDGGVVEMLEGSMQSNSIRPRRTLLPQRKLSNTPSDPTNSQEQASSNVSLNALVPSQNLDVQKKDQFSVHTNSTAQDAKATNELENLSSHMGSLGFAEMEWVEGNQIEASSSSSLLGCNQKGDVQQAGFDASLRCDSGVSSVLPKRSVVTQDHLQQFSSFLSQPATHSSVLGPSCATTTSVHSTSAPMLNSTTRYSHSHLDGGSNVTAEPFGEVNANPRPVTEGVVKSVNVFQKETNRVLVDRGAEAEVPASDLGIGDAELVSKESSRSTEQQGGVLPPTSTTTCSDVKLESSKVEKREKIGSSKGASAPRKRTYDPDLFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCRIFALKKIKLKGRDYATAFGFCQEIEYLNRLKGKDNIIQLIDYEVTDKALLEEVMKGSLSNRDGRVKDDGCIYMVLEYGEIDLAHMLSQKWKELDGSHRTIDENWLRFYWQQILLAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMNDTTNIQRDSQVGTLSYMSPEAFMCNETDANGNIIKCGRSSDIWSLGCILYQMVYGRTPFSDYKTFWAKFKVITDPHHEITYEPVSNPWLLDLMMRCLTWDRNQRWRIPQLLEHPFLVPPVPSHPSMPQDNNSCKLLQHISETCTYDPEVSELCSQLQRLLSDSVDKTTHSLNSRDQQLKLLSQMSDMCIQLHERLRNTGNK 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01578 834 ProSitePatterns Protein kinases ATP-binding region signature. 462 484 IPR017441 GO:0005524
Vian4g01578 834 PANTHER MIXED LINEAGE PROTEIN KINASE 142 782 - -
Vian4g01578 834 MobiDBLite consensus disorder prediction 394 417 - -
Vian4g01578 834 SUPERFAMILY Protein kinase-like (PK-like) 450 760 IPR011009 -
Vian4g01578 834 ProSitePatterns Serine/Threonine protein kinases active-site signature. 603 615 IPR008271 GO:0004672|GO:0006468
Vian4g01578 834 CDD PKc_Mps1 454 749 IPR027084 -
Vian4g01578 834 Gene3D Phosphorylase Kinase; domain 1 449 536 - -
Vian4g01578 834 MobiDBLite consensus disorder prediction 418 440 - -
Vian4g01578 834 ProSiteProfiles Protein kinase domain profile. 456 749 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01578 834 MobiDBLite consensus disorder prediction 390 440 - -
Vian4g01578 834 Pfam Protein kinase domain 456 749 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01578 834 FunFam serine/threonine-protein kinase mph1 isoform X1 570 752 - -
Vian4g01578 834 SMART serkin_6 456 749 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01578 834 MobiDBLite consensus disorder prediction 138 175 - -
Vian4g01578 834 Gene3D Transferase(Phosphotransferase) domain 1 570 752 - -
Vian4g01578 834 FunFam serine/threonine-protein kinase mph1 isoform X2 449 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01578 Vian-Chr4 31247084 31255795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01578 462 750 MAP Kinase Kinase Kinase AT4G08470 28.912 5.76e-25 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TTK Vian4g01578 Pkinase 4.6e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01578 K08866 - gmx:100780144 1139.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01578 4 31247084 31255795 Vian4g01578 4 31247084 31255795 ECH