Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01573 ATGGCCGACACTCCGAGATCCAAGGGCACCGTTAAGTGGTTCAACCAGGATAAGGGTTTCGGATTCATCACTCCCCAAGATGGTTCCAGTGATGTCTTCGTTCACTACACTGCCATCCGATCCGACGGCTACCGCTCCTTGACCGACGGTCAGTCTGTCGAGTACCTCATCGTTTACGAAAACGACGGCCGCCCCAGTGCTGTCGATGTCACCCTCGCCACGACCGGCGACGTAACCTCTGCCACGACAGGCGAGGTAACCCCTGCCACGACAGGCGAGGTTCTTCTAGAACCTTCTATTCCGTTCTTCCGTTCCAACTCTTCAGGACCCATGGCCGAAACTCGGAGATCCACGGGCACCGTTAAGTGGTTCAACGCGCAGAAGGGTTTCGGATTCATAACTCCCCAGGACGGCTCCGAAGATCTCTTCGTTCACTTCACTTCCATCCGATCCGACGGCTACCGCTCCTTGACCGAGGGCCAGTCTGTCGAGTTCCTACTCGATTACGGCGACGACGGCCGTGCCATGGCCGTCGACGTCACCTCCGCCGTTAGATCTCGCCGTCCAGGAGGTTTTCGCGGTGGGAGCGGGAGAGGAAGAGGACGCTACGGCGGAGGGGAAGGCCGTGGTGGAGGGATCGGCCGGAGAGGGGCAGGAGGTTACGGCGGTGGAGGAGGAGGACCTGAGTGTTATAATTGTGGAAGAATAGGTCACTTGGCTAGGGATTGTTACCACGGACAGGGTGGTGGTGGTGGTGGTGCAGGTGGTGATGGTAGGATACGGAGACGCGGTGGAGGAGGAGGCGGCGGCGGCGGTGGTGGAGGAGGGTGTTATAACTGTGGGGAAGAAGGGCATTTTGCAAGGGAATGTCCGAACGTTGGGAAATTAAATGAGTGA 897 0.5842 MADTPRSKGTVKWFNQDKGFGFITPQDGSSDVFVHYTAIRSDGYRSLTDGQSVEYLIVYENDGRPSAVDVTLATTGDVTSATTGEVTPATTGEVLLEPSIPFFRSNSSGPMAETRRSTGTVKWFNAQKGFGFITPQDGSEDLFVHFTSIRSDGYRSLTEGQSVEFLLDYGDDGRAMAVDVTSAVRSRRPGGFRGGSGRGRGRYGGGEGRGGGIGRRGAGGYGGGGGGPECYNCGRIGHLARDCYHGQGGGGGGAGGDGRIRRRGGGGGGGGGGGGGCYNCGEEGHFARECPNVGKLNE 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01573 298 SMART c2hcfinal6 229 245 IPR001878 GO:0003676|GO:0008270
Vian4g01573 298 SMART c2hcfinal6 276 292 IPR001878 GO:0003676|GO:0008270
Vian4g01573 298 Pfam Zinc knuckle 229 243 IPR001878 GO:0003676|GO:0008270
Vian4g01573 298 Pfam Zinc knuckle 276 292 IPR001878 GO:0003676|GO:0008270
Vian4g01573 298 ProSiteProfiles Cold-shock (CSD) domain profile. 6 72 IPR002059 GO:0003676
Vian4g01573 298 SUPERFAMILY Nucleic acid-binding proteins 115 181 IPR012340 -
Vian4g01573 298 Gene3D - 273 296 - -
Vian4g01573 298 ProSiteProfiles Zinc finger CCHC-type profile. 230 243 IPR001878 GO:0003676|GO:0008270
Vian4g01573 298 Gene3D - 214 252 - -
Vian4g01573 298 ProSiteProfiles Zinc finger CCHC-type profile. 277 292 IPR001878 GO:0003676|GO:0008270
Vian4g01573 298 Pfam 'Cold-shock' DNA-binding domain 8 72 IPR002059 GO:0003676
Vian4g01573 298 Pfam 'Cold-shock' DNA-binding domain 118 181 IPR002059 GO:0003676
Vian4g01573 298 SUPERFAMILY Retrovirus zinc finger-like domains 219 292 IPR036875 GO:0003676|GO:0008270
Vian4g01573 298 CDD CSP_CDS 118 181 IPR002059 GO:0003676
Vian4g01573 298 MobiDBLite consensus disorder prediction 187 215 - -
Vian4g01573 298 PANTHER COLD SHOCK DOMAIN PROTEIN 2 111 292 - -
Vian4g01573 298 FunFam Cold shock protein CspC 116 183 - -
Vian4g01573 298 ProSiteProfiles Cold-shock (CSD) domain profile. 116 182 IPR002059 GO:0003676
Vian4g01573 298 SUPERFAMILY Nucleic acid-binding proteins 5 72 IPR012340 -
Vian4g01573 298 CDD CSP_CDS 8 72 IPR002059 GO:0003676
Vian4g01573 298 ProSitePatterns Cold-shock (CSD) domain signature. 20 39 IPR019844 -
Vian4g01573 298 Gene3D - 105 181 IPR012340 -
Vian4g01573 298 Gene3D - 1 71 IPR012340 -
Vian4g01573 298 FunFam Cold shock protein CspC 6 73 - -
Vian4g01573 298 SUPERFAMILY Retrovirus zinc finger-like domains 262 295 IPR036875 GO:0003676|GO:0008270
Vian4g01573 298 ProSitePatterns Cold-shock (CSD) domain signature. 130 149 IPR019844 -
Vian4g01573 298 SMART csp_8 118 183 IPR011129 GO:0003676
Vian4g01573 298 SMART csp_8 8 73 IPR011129 GO:0003676
Vian4g01573 298 PRINTS Cold shock protein signature 119 134 IPR002059 GO:0003676
Vian4g01573 298 PRINTS Cold shock protein signature 140 149 IPR002059 GO:0003676
Vian4g01573 298 PRINTS Cold shock protein signature 155 173 IPR002059 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01573 Vian-Chr4 31193657 31198507 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Vian4g01573 CSD 9.6e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01573 - - gmx:100815773 211.075