Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01563 ATGTCGTTGAGTCCTCCGAGAGAGAGAAACAACGTGAATGGCAGAAGGCGAGAGAGGCCAACGTTCCAGATGTACTGGTGCTTCCAGTGCAACCGCATGGTCCGCGTCGCAGTGGATAACAATAACCCCTCAGAGGTCACGTGTCCGCGCTGCTTCGGCCAATTCATATGCGAAGTAAACGTGCCGCGCCCAAGACTCGTTGTCGATTTCACTACCCCAGACCCCTCCCCAGAAGCGCGTTTGCTCGAAGCGCTTTCCCTCATGATGGACCCACCCATACGCCGTTTCCCGGGTCTCCTCCAACCCGAACCCGAAGAGGTCCCGGTTCATCACCACCGCCGCCGTCGCTTACGCCGCCACGAACCCGAATCCGAACCCGTCCCTGAACCCCCACAACCCCGCCCGCGCACGTGGATCGTATTCCAGCCCATGGACTCACCCAACCCCTTCCTGTCCATTAACAACATTCCTAACCGCCCCGGCCCAGGCCCACTCCCATTCCCGCTACCGCGCGCCGTGGACACTCGCGACTATTTCTTTGGACCTGGACTCAACGAACTCATCGAACAGATAACCGAAAACGACAGACAGGGTCCCGCGCCGGCGCCGGAGAGGGCCATCAAATCGATTCCGACAGTGAAAATTGTGAGCGCGCATCTGAAGGAGAATTCTCAGTGTCCAGTTTGTCAGGAGGAATTCGAAGTTGGCGGGGAAGCGAGGGAACTTGCGTGCAAACACATATATCACTCGGATTGCATTGTTCCGTGGCTGAGGCTTCACAATTCTTGTCCAGTGTGCCGTCAAGAGGTTTCTGTGCCGTCTTCTTCGTCGGAGGAGGATGAGTGTGTTGATGTAAGCGGAGATGAAGGTAGGTTGCGGAGGTGCTTGAGGTGGACCCGTCGTTTTACTTCGGTTTGGCCTTTCAACTCAAGGTATCGACGGGTTCACCCTCAAGGAAATAATAATGTTGCTGCTGCTTCTTCCAGGGGTGAATCATAA 999 0.5606 MSLSPPRERNNVNGRRRERPTFQMYWCFQCNRMVRVAVDNNNPSEVTCPRCFGQFICEVNVPRPRLVVDFTTPDPSPEARLLEALSLMMDPPIRRFPGLLQPEPEEVPVHHHRRRRLRRHEPESEPVPEPPQPRPRTWIVFQPMDSPNPFLSINNIPNRPGPGPLPFPLPRAVDTRDYFFGPGLNELIEQITENDRQGPAPAPERAIKSIPTVKIVSAHLKENSQCPVCQEEFEVGGEARELACKHIYHSDCIVPWLRLHNSCPVCRQEVSVPSSSSEEDECVDVSGDEGRLRRCLRWTRRFTSVWPFNSRYRRVHPQGNNNVAAASSRGES 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01563 332 FunFam E3 ubiquitin-protein ligase RING1-like 189 273 - -
Vian4g01563 332 ProSiteProfiles Zinc finger RING-type profile. 226 267 IPR001841 -
Vian4g01563 332 Pfam zinc-ribbon 23 58 IPR039525 GO:0061630
Vian4g01563 332 SMART ring_2 226 266 IPR001841 -
Vian4g01563 332 Pfam Ring finger domain 225 267 IPR001841 -
Vian4g01563 332 MobiDBLite consensus disorder prediction 98 135 - -
Vian4g01563 332 SUPERFAMILY RING/U-box 206 273 - -
Vian4g01563 332 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 123 270 - -
Vian4g01563 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 273 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01563 Vian-Chr4 30977714 30978712 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01563 198 316 C3H Transcription Factor Family AT1G68180 43.697 1.35e-26 103
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01563 4 30977714 30978712 Vian4g01563 4 30977714 30978712 ECH