Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01554 ATGGGTGAGTGGTTGAGAAATGCAAGGCCCTATCTGCTGTTATTGGCTGTTCAATTTGGTTCTGCTGGGATGTTCATATTTGCCATGGATGCTATAAAGAAGGGTATGAGCCATTACGTCTTCATTGTCTACCGTAATGCCATCGCCTCTGTTACTCTCGCTCCCTTCGCCTTTGTTCTTGAAAGGAAAGTTAGGCCCAAGATGACTTTCAGAGTATTTTCAGAGATTATGGCACTGGCTTTCTTCGAAATAATACTGGATCAGTGTTTCGCTCTGTTGGGCATGAAATTCACGTCTGCTTCTTTCTTATCTGCTGTCATGAACTCTGCTCCCTCTATTACTTTTGTCATGGCAGTCATTCTAGGAATGGAGCACATGAAAATTAAGGAGGTAGCATGTCAAGCAAAAGTGATTGGCACCGTAGTAACATTTGGAGGAACCTTGCTTATGGCACTGTACAAAGGCCCCGTCCTCAGTTTCATGAGATCTTCGACCAGCCATGCGAGCCAAACTGAGAACGTGACCAACCCCACTGGCAACCATTGGGTAATAGGAACAGTGTTCCTCCTCATTGGTTGTGCAGGCTTTTCTGCATTTTACATATTACAGGCCATAACATTGAGAAAATACCCAGCAGAGATGTCGTTGGCCACTTGGGTTTGCTTTGTAGGAGCACTTCAAAGCTCTATTGTTGCAATCTTCGCAGAACGCCACCACCCTCATGCTTGGTCCCTTGGTTGGGACACACGACTCTTTGCCCCTGCTTACGCGGGAATAGTTACATCAGGAGTTCAGTATTATATACAAGGCATGGTGATAAAAACCATGGGTCCAGTTATTGTGACTGCTTTCAATCCTCTGCGTATGATCATTGTTACGGGCTTGGCCTGCATCATCCTATCTGAGCAACTCTACCTTGGAAGTATAATTGGAGCAATAGTTGTTGTACTGGGGCTTTATCTAGTAGTGTGGGGAAAAGCTAAAGAACGCAGAGGTCTGACGCCACCATCTCCTACAGAGGGTAACTTTCCCGAAGATCAACGACAGCTACCGGTCACAGCTCCAAGGAATGATAACGATGACAATAAGGCTTAA 1095 0.4548 MGEWLRNARPYLLLLAVQFGSAGMFIFAMDAIKKGMSHYVFIVYRNAIASVTLAPFAFVLERKVRPKMTFRVFSEIMALAFFEIILDQCFALLGMKFTSASFLSAVMNSAPSITFVMAVILGMEHMKIKEVACQAKVIGTVVTFGGTLLMALYKGPVLSFMRSSTSHASQTENVTNPTGNHWVIGTVFLLIGCAGFSAFYILQAITLRKYPAEMSLATWVCFVGALQSSIVAIFAERHHPHAWSLGWDTRLFAPAYAGIVTSGVQYYIQGMVIKTMGPVIVTAFNPLRMIIVTGLACIILSEQLYLGSIIGAIVVVLGLYLVVWGKAKERRGLTPPSPTEGNFPEDQRQLPVTAPRNDNDDNKA 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01554 364 MobiDBLite consensus disorder prediction 331 364 - -
Vian4g01554 364 SUPERFAMILY Multidrug resistance efflux transporter EmrE 220 328 - -
Vian4g01554 364 SUPERFAMILY Multidrug resistance efflux transporter EmrE 44 154 - -
Vian4g01554 364 PANTHER WAT1-RELATED PROTEIN 10 337 IPR030184 GO:0016020|GO:0022857
Vian4g01554 364 Pfam EamA-like transporter family 184 323 IPR000620 GO:0016020
Vian4g01554 364 Pfam EamA-like transporter family 10 150 IPR000620 GO:0016020
Vian4g01554 364 MobiDBLite consensus disorder prediction 340 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01554 Vian-Chr4 30816028 30819188 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01554 3 363 Nodulin-like Gene Family AT2G37460 43.923 5.11e-110 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01554 - - gmx:100811984 652.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01554 4 30816028 30819188 Vian4g01554 4 30816028 30819188 ECH