Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01548 ATGGAGTCCACCGTCATGGACTGCAGTCCTTCCTCCAGTGCCGCCCCGCCCCGCCGCAGTGGTCGCCGGAAGCTGGTTCAATCGACGCTCTTCCCTCTCAAGCCACCGGAGCCCGTTGAGAAGAAGGACAAAGAGGACGAACCCGACGAGGATTACTCTGAGGCTAAGAATAACAAGAAGAGAAAGAGGTCCAAGGCAAAAGCCACTCCTCCGATCGACGAGGATTACTCTGAGGCTGAGAATAACAAGAAGAGGACGAGGTCCAAGGCAAAAGCCACTCCTCCGAAAAAAGGTTCTTCTAAGCGTCCCACGCCAAAGAAAAAAACAACTGCTAATGGCACTAAGGGGTCAACTTCGCAGCAGGTGTTGGCTAATTCCGATCAGGTTAAGGCACCTGTGTATGATTTGTTTCTAGAGGCAAAATTGGCTGCTGAGGAAGATTCGAGGATATATGCAGGACGTCAGGTACATCCATTTTTTTCATTATGGAAGGAGGGAAAAAAAGTTCATGATGTGAGTGAATCAGGAAGTAATTTACCAACAACAAAGAGTAAGCATAAAAGGACTACTTGCGGCCCTATTCACGTATTTGAAAATGTTAAGGATGATACGTCATCAGTTGACTGGAGAAACTGGATGTTTATGGAGAATATCACCTCCATGAACTATGGTCAAGAGAGTGTAAATTCATCTGTTTTCGAGGGTTCTGTTGAATCCTTAAATTTTGATAAGCTTCACAGTTTTTTGAATCCATCAGGCATTTCAATTTCTCAGAATGCCTTATCACCATCAAACCCATCTTCACTAGCAGAGCAATCAGCATGTCTGACGTGTGGAAATGCTGAACTGGACATGAAGGTGGATGAATCTGTTACTCCAACTGTGCAAGCTGGCATTTTTAGAAAGTCTAAAGATACCGAACCACTGAATAGATTTCTTCAAGAAAGTATGAGATCATACTACCGTAGCTGTTTAGATATAGAGGAGTCCAACTTATGGACACACAAATATAAGCCAACGAAGGCTGTTGAGGTATGCGGGAATGATGAATCTGTTAATTTCTTGAGTGATTGGCTACATTGTTGGCATGAAAGGCAATATAAAAGCAGGAATGATAATACTGACACTGATAAAAGTGGCATGCAAGATGTTGAAGATGAAGATGATGATTATAAATGTTCTTATAGTGACTGTGACTCAGAAGATATGAATGAGAAGGATTCCCTGCAAAATGTTCTTTTAATTACAGGACCAATTGGGAGTGGCAAGTCTTCAGCAGTCCATGCTTGTGCCAAAGAGCAAGGGTTTGTTATTTTAGAGTTCAACTCATCACATTCTACAAATGGGACTGCTATCAGGAACTTGGAACATTCTCTTAATTCACTTGGGTTCAAAAGCCAATCAGGAAGCACTGCAAGTTCACATAAGACCTCAGCTCTGGCTATGCTCAGTGGTAAAGCTGCTGATGAGGCGAATGGAGTGGATGAACTGGTAACCATATCCGATGATGAAGCCCGTAGCCATAGTGGATCAACATTAAAGATACACGGTGAAAATAATGATACTGAAAAATATAAAATCCATCGTTTAGTTCTAGTTGAGGATGCGGACATCCTTTTTGCCGAAGATCGTGGATGTATTGCTGCCATACAACAGATTGCTGAGACATCAAAGGGGCCAATTATATTGACCAGTAATAGTGATAATCCTGGTCTGCGACATAAGTTTGACATGCTCCATGTTCCATTCGTGTTGCCATCACCAAAGGAATTGCTTTGCCATTTGTACAGTGTTTGTCTCACTGAAGGAGTCAACATCCATCCTCTTTTACTAGAGAAGTTTATACATTCTTGTGATGGAGATATCCGAAAAATCATTATGCATCTTCAATTCTGGTTTCAGAGTAAAACATTTAAAAAAGATGAAAAGGCACAAACAGGTTATGGCTCACTTCCATTTGATCTTGAGCTTGCCCATGAGATTCTTCCGAAGATAATGTCCTGGGATTTCCCCTCTGTGATTTCCGATCTAATTGAGAACAAAATAGCTAAACAAACAAATATAATGGAAGAAAACTCCAAAGGGTTTACAGAAAAGCTTCACATAAGTGAACGGCAAAAAGATTTAAAAGTGAATTATACGGAGACTGATGATATAGAGGCCATGAAGGCGGAGATGATTAATAGAAATGGATTGTTGACGGATTACTGTGAGCTTGAAATTCAACGTAGCACTATTTCTGAGTTTTCCAATTCTTCTGGTTCCCCACTTGCATCCTCTAGGCATAATGGTCGAAGGAAACTTGTAGTGATGTCCTCTGACTCTGAGGATGACAATTCAAATTGTGGATATCCTGTAGACTTCCACGATGAAGCTAATACGAGGCAACCGATGAAAGAAAATAATGGTTGTCCATCAGAATTTCAATTAAATGGAAACTACCCGGGCACATCAATTGACAGACTAGTTTGTTCCTATTTGGAGCACTCAGAGGACGAAGATTTTAAATATTCAGAAATGGCTGATGGTGCATACTTGAATGAAACTTGTAAATCACTAGATGTATCATGTGTGCCAGAATCAACGTTTGTTCCTGAAACTGAAATTGAAAACGGAACAGAGACATTGTCTGGAGCCGTGTCTTCTGGTCCTGCTCTCCCTTTTGTTAGTCTTCCAGAAGTATCTGTAAATAATGAGTTGAAACTATTCAATGTCAATGTTCGTAGGCGCTTAACAAAATTGTCACAGAATCCAGATTTGTTGGCGGATACTGAAATTCCAGATCATTCTTTTCAAGGGGTTCTGCCTGATGTTCAAGATGAACATACGGAGACACTTATTAAAGTGATGGATGAATGCAGTCGAATGGATTTCAAACCAAAGCCAACATTGTCGCAGTCCAATCCATTAGACGAGACAGAAAAGATACAAAACGTGTGGAGAGATCTCCGTGATCGCCGAGTGGATTTAAGACAGCATTCTATCTCAGAAGAGCTTGGTGCTTTTCATGTTGTTAAGCTTGCTAGTGGACTGTGCAATCTAATTTCAGATGTTGACTTGTTTCCTAAATGGGATAGAATGGAACCTTCAATGTTCCTTTCTTACGAAGCTGCATCACATGATTATTGTGAACAAATGATGTCCACTGTGGCTGAGCATGGGTTTTGCTTTTACGCTAAGCTTATAGCAGATGAAGGATCAAAGTTGGGTTGTGCAAATTGTGCTGATATTACTTCTGAGATGTTGGCTTCCTCCACTGATATTATGGCATTGGGGAAACTATCCCGACAGGATCTCTCGAAAATGAAGGCTTTCCGTACTGGAAATGAAGTAGTGTGGAACACCCAAATAAATATGCAAAAGAGTGAAAAGAAAAGATCTCTAATCGAGATCATCCAATCCGTCGCTCCTCCAAGAACATCCTTGGCATTAAAAGGTTATGCATTCAACGAATATCTATCTTCACTACGCCAAATTTGTAGGTCTGAAGCTTTCCGTATTTCACAAGTGGTCGAAAAGAAGAGAGGAGGAAGGGTACGGGGCGTTCACCATTACTTGAGCACAAATACCAAGTTGTCTCCAGACGAAATATCTTTGGTGACCGATGCTGATCCCTACAGAAAAATTTCTTCCCAACATACAACATAG 3648 0.4112 MESTVMDCSPSSSAAPPRRSGRRKLVQSTLFPLKPPEPVEKKDKEDEPDEDYSEAKNNKKRKRSKAKATPPIDEDYSEAENNKKRTRSKAKATPPKKGSSKRPTPKKKTTANGTKGSTSQQVLANSDQVKAPVYDLFLEAKLAAEEDSRIYAGRQVHPFFSLWKEGKKVHDVSESGSNLPTTKSKHKRTTCGPIHVFENVKDDTSSVDWRNWMFMENITSMNYGQESVNSSVFEGSVESLNFDKLHSFLNPSGISISQNALSPSNPSSLAEQSACLTCGNAELDMKVDESVTPTVQAGIFRKSKDTEPLNRFLQESMRSYYRSCLDIEESNLWTHKYKPTKAVEVCGNDESVNFLSDWLHCWHERQYKSRNDNTDTDKSGMQDVEDEDDDYKCSYSDCDSEDMNEKDSLQNVLLITGPIGSGKSSAVHACAKEQGFVILEFNSSHSTNGTAIRNLEHSLNSLGFKSQSGSTASSHKTSALAMLSGKAADEANGVDELVTISDDEARSHSGSTLKIHGENNDTEKYKIHRLVLVEDADILFAEDRGCIAAIQQIAETSKGPIILTSNSDNPGLRHKFDMLHVPFVLPSPKELLCHLYSVCLTEGVNIHPLLLEKFIHSCDGDIRKIIMHLQFWFQSKTFKKDEKAQTGYGSLPFDLELAHEILPKIMSWDFPSVISDLIENKIAKQTNIMEENSKGFTEKLHISERQKDLKVNYTETDDIEAMKAEMINRNGLLTDYCELEIQRSTISEFSNSSGSPLASSRHNGRRKLVVMSSDSEDDNSNCGYPVDFHDEANTRQPMKENNGCPSEFQLNGNYPGTSIDRLVCSYLEHSEDEDFKYSEMADGAYLNETCKSLDVSCVPESTFVPETEIENGTETLSGAVSSGPALPFVSLPEVSVNNELKLFNVNVRRRLTKLSQNPDLLADTEIPDHSFQGVLPDVQDEHTETLIKVMDECSRMDFKPKPTLSQSNPLDETEKIQNVWRDLRDRRVDLRQHSISEELGAFHVVKLASGLCNLISDVDLFPKWDRMEPSMFLSYEAASHDYCEQMMSTVAEHGFCFYAKLIADEGSKLGCANCADITSEMLASSTDIMALGKLSRQDLSKMKAFRTGNEVVWNTQINMQKSEKKRSLIEIIQSVAPPRTSLALKGYAFNEYLSSLRQICRSEAFRISQVVEKKRGGRVRGVHHYLSTNTKLSPDEISLVTDADPYRKISSQHTT 1215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01548 1215 Gene3D - 330 579 IPR027417 -
Vian4g01548 1215 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 588 649 - -
Vian4g01548 1215 MobiDBLite consensus disorder prediction 36 58 - -
Vian4g01548 1215 MobiDBLite consensus disorder prediction 67 87 - -
Vian4g01548 1215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 331 662 IPR027417 -
Vian4g01548 1215 Gene3D - 586 648 - -
Vian4g01548 1215 MobiDBLite consensus disorder prediction 105 124 - -
Vian4g01548 1215 MobiDBLite consensus disorder prediction 1 16 - -
Vian4g01548 1215 MobiDBLite consensus disorder prediction 88 104 - -
Vian4g01548 1215 MobiDBLite consensus disorder prediction 1 124 - -
Vian4g01548 1215 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 11 1212 IPR004582 GO:0006281
Vian4g01548 1215 MobiDBLite consensus disorder prediction 370 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01548 Vian-Chr4 30714897 30724343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01548 327 631 Core DNA Replication Machinery Family AT5G22010 23.779 8.07e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01548 K26118 - gmx:100784209 1556.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01548 4 30714897 30724343 Vian4g01548 4 30714897 30724343 ECH