Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01539 ATGGCAGTGGGAAAGAACAAGAGGATATCGAAAGGGAAAAAGGGTGGCAAGAAGAAGGCCGCTGATCCTTTTACCAAGAAGGATTGGTACGACATCAAGGCTCCTTCTGTGTTTCAGGTCAAGAATGTTGGTAAGACTCTCGTCACTCGCACTCAGGGCACCAAGATTGCTTCGGATGGACTCAAACATCGAGTGTTTGAGGTCTCGCTGGCTGATCTTCAAGGTGACGAGGACCATGCGTTCAAGAAGATTCGTTTGAGGGCTGAGGATGTTCAAGGGAAAAATGTTCTGACGAACTTCTGGGGAATGGATTTCACAAACGACAAGTTGAGGTCATTGGTGCGAAAATGGCAAACTTTAACTGAGGCTCATGTCGATGTGAAGACCACTGATAATTATACTTTGAGGTTGTTCTGCATTGGGTTTACTAAGAGGCGAAGTAACCAGGTGAAGAGGACCTGTTATGCACAATCGAGCCAAGTTAGACAGTTACGAGATTCTCTTTCTGGTCTTGAGAATTGGAGAATGGGTTTTGCCTCTTGTTATCTTATATCATTACATATTCGAAGGAAGATGAGGGAGATAATGATCAACCAAGCAACATCCTGCGATTTGAAAGAACTGGTCCGCAAGTTCATCCCTGAGATGATTGGAAAAGAGATTGAGAAGGCAACTTCCAGTGTCTATCCTCTACAGAATGTGTTCATTCGTAAAGTCAAAATCCTGAAAGCTCCGAAGTTTGATCTAGGGAAACTGATGGAGATTCATGGAGATTACTCAGAAGATATTGGTACAAAAATGGATAGGCCTGTTGACGAAACAGTGGTTGAGGGAGCCACTGAAGTGGTTGGAGCTTGA 858 0.4406 MAVGKNKRISKGKKGGKKKAADPFTKKDWYDIKAPSVFQVKNVGKTLVTRTQGTKIASDGLKHRVFEVSLADLQGDEDHAFKKIRLRAEDVQGKNVLTNFWGMDFTNDKLRSLVRKWQTLTEAHVDVKTTDNYTLRLFCIGFTKRRSNQVKRTCYAQSSQVRQLRDSLSGLENWRMGFASCYLISLHIRRKMREIMINQATSCDLKELVRKFIPEMIGKEIEKATSSVYPLQNVFIRKVKILKAPKFDLGKLMEIHGDYSEDIGTKMDRPVDETVVEGATEVVGA 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01539 285 ProSitePatterns Ribosomal protein S3Ae signature. 61 73 IPR018281 GO:0003735|GO:0005840|GO:0006412
Vian4g01539 285 MobiDBLite consensus disorder prediction 1 21 - -
Vian4g01539 285 MobiDBLite consensus disorder prediction 1 15 - -
Vian4g01539 285 SMART Ribosomal_S3Ae_2 15 245 IPR001593 GO:0003735|GO:0005840|GO:0006412
Vian4g01539 285 Hamap 40S ribosomal protein S1 [RPS3A]. 1 282 IPR027500 GO:0003735|GO:0005840|GO:0006412
Vian4g01539 285 PANTHER 40S RIBOSOMAL PROTEIN S3A 1 276 - -
Vian4g01539 285 Pfam Ribosomal S3Ae family 187 245 IPR001593 GO:0003735|GO:0005840|GO:0006412
Vian4g01539 285 Pfam Ribosomal S3Ae family 16 167 IPR001593 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01539 Vian-Chr4 30593608 30595576 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01539 1 285 Cytoplasmic Ribosomal Protein Gene Family AT3G04840 74.825 2.56e-153 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01539 K02984 - gmx:100805519 444.121