Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01537 ATGGAAGGTGAGGAGGGAAAAGAGTGCTCTCAAAACCCTTACGTTGAACTAGAAGAAGTTGACTTCGATTTTATTCTAGCATTGAGCATGCAGGAACACGAGAGAGAGTTCACAATGCTTTCAACCATTGAAAGTGAAAGTGATGAATATCTGAGTGACTCCTCTATTGATAATGATGATGATGGTGATCCTAACTTCGTAGAGAGTCAAGAGTTTGACTCTGATCTTCAGTTTCTTGAAGATGAAGAAAGCAATGATAACGATGATGATGATGATGAAGAAGAAATGGAAGTGGAAGAAGATGAGATTGATCCAGACGAATTATCTTATGAAGAGTTGATGGAGTTGGGAGAGTTTATAGGAGAAGAAACGAGGGGATTATCCGCAAATGAAATCTCTATGTGCTTGAACTCTTATACTTGGCAACGTGGTGAAAGAAAAAGTGGAATCGATCGCTGTGTGATTTGTCAGGTTGAATATGAAGATGATGAAGCATTGGTGGCACTTCAATGTGAGCACCTTTATCATGCAGATTGCATAAGCAAGTGGCTTCAAATTAAGAAGGTTTGTCCCATTTGTAGCAATGAAGTTTCAACTCCAAACATGGCTTCCAACACTTAA 621 0.3913 MEGEEGKECSQNPYVELEEVDFDFILALSMQEHEREFTMLSTIESESDEYLSDSSIDNDDDGDPNFVESQEFDSDLQFLEDEESNDNDDDDDEEEMEVEEDEIDPDELSYEELMELGEFIGEETRGLSANEISMCLNSYTWQRGERKSGIDRCVICQVEYEDDEALVALQCEHLYHADCISKWLQIKKVCPICSNEVSTPNMASNT 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01537 206 Pfam Ring finger domain 152 193 IPR001841 -
Vian4g01537 206 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 95 201 IPR043312 -
Vian4g01537 206 FunFam E3 ubiquitin ligase BIG BROTHER-related 119 200 - -
Vian4g01537 206 MobiDBLite consensus disorder prediction 50 104 - -
Vian4g01537 206 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 206 IPR013083 -
Vian4g01537 206 MobiDBLite consensus disorder prediction 45 104 - -
Vian4g01537 206 ProSiteProfiles Zinc finger RING-type profile. 153 194 IPR001841 -
Vian4g01537 206 SUPERFAMILY RING/U-box 152 200 - -
Vian4g01537 206 SMART ring_2 153 193 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01537 Vian-Chr4 30588490 30589110 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01537 80 197 C3H Transcription Factor Family AT3G63530 47.107 1.06e-30 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01537 K19045 - gmx:100526881 298.901