Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01534 ATGACGACCCATCTCATGGAAATCGACAGCGATAGCGATGACCAGACAAACTCCGCCGGGGAAAATGACATACTTGCCGCAGACCTTACTGCCCTCGGCAAGGCCATTCCGTGGGTTGAAAAATACCGCCCTCAGTCTCTCGACGACGTCGCCGCTCACCGTGACATTGTTGATACCATTGATAGGCTGACTACAGAGAACAGATTGCCGCATCTTTTATTGTATGGCCCTCCTGGAACGGGTAAAACATCAACCATTCTCGCTGTGGCACGCAAACTATATGGTCCACGCTTCCAAAATATGATTTTGGAGCTCAATGCATCAGATGACAGAGGAATTGAGGTCGTGAGACAGCAGATTCAAGATTTTGCTAGCACTCAGAGCTTATCATTTGGGTTGTCTTCTCTGTCCTTTATCTCTCGAATTGATATTCTTTTGCTTTTCGAGTTGATATTCTTTTTGATTTTGCAGCTTTATGTTCTGCATTGCGTACTTCTACTTCCTATACTAGTCTATTGGTCAATTCAGAGTGTTAAGTCTTCTGTAAAGCTCGTATTGTTGGATGAAGCAGATGCCATGACAAAGGATGCCCAATTTGCATTACGTAGAGTGATTGAGAAATATACAAAAAGCACCAGGTTTGCTCTTATCTGTAATCATGTAAACAAGATTATTCCTGCACTTCAATCTAGATGCACTCGATTTCGATTTGCCCCTCTTGACGCTGTCCATGTCACTGAAAGACTGAAACACGTTATTAAGGCTGAAGGGCTTGATGTTGAAGACGATGGCTTAGCAGCCCTTGTTCGGCTTAGCAATGGTGATATGAGAAAGGCTTTAAATATTCTTCAGTCAACACATATGGCTACTCACCAGATAACTGAAGAAGTTGTTTACCTTTGCACTGGAAATCCATTGCCCAAAGATATTGAGCAAATATCTTACTGGCTTCTAAACGAACAATTTGCAGATAGCTTTAAAAGAATAGATGAAATGAAGACCAGGAAAGGGTTGGCCCTGGTTGATATTATCAGAGAAGTGATCATGTTTGTTTTTAAGATTAAGATGCCTTCAGCTGTTCGAGTACAATTGATGAATGATTTGGCAGACATAGAGTACAGATTAAGTTTTGGGTGCAATGATAAGCTTCAGCTTGGATCGGTCATTGCTTCTTTTACACGTGCTAGATCTGCACTGGTAGCTGCTGCCACATAG 1215 0.4222 MTTHLMEIDSDSDDQTNSAGENDILAADLTALGKAIPWVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGPRFQNMILELNASDDRGIEVVRQQIQDFASTQSLSFGLSSLSFISRIDILLLFELIFFLILQLYVLHCVLLLPILVYWSIQSVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVIKAEGLDVEDDGLAALVRLSNGDMRKALNILQSTHMATHQITEEVVYLCTGNPLPKDIEQISYWLLNEQFADSFKRIDEMKTRKGLALVDIIREVIMFVFKIKMPSAVRVQLMNDLADIEYRLSFGCNDKLQLGSVIASFTRARSALVAAAT 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01534 404 Pfam Rad17 P-loop domain 37 106 - -
Vian4g01534 404 Gene3D - 305 402 - -
Vian4g01534 404 Gene3D - 30 240 IPR027417 -
Vian4g01534 404 CDD HLD_clamp_RFC 240 302 - -
Vian4g01534 404 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 37 386 - -
Vian4g01534 404 Gene3D - 243 304 - -
Vian4g01534 404 SMART AAA_5 68 243 IPR003593 GO:0016887
Vian4g01534 404 Pfam DNA polymerase III, delta subunit 174 240 - -
Vian4g01534 404 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 298 IPR027417 -
Vian4g01534 404 CDD AAA 56 239 - -
Vian4g01534 404 FunFam Replication factor C subunit 5 305 402 - -
Vian4g01534 404 Pfam Replication factor C C-terminal domain 305 391 IPR013748 -
Vian4g01534 404 FunFam Replication factor C subunit 5 242 304 - -
Vian4g01534 404 SUPERFAMILY post-AAA+ oligomerization domain-like 305 395 IPR008921 GO:0003677|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01534 Vian-Chr4 30554757 30562970 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01534 3 403 Core DNA Replication Machinery Family AT1G77470 68.293 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01534 K10756 - gmx:100782652 598.586