Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01528 ATGTCGGACGAGGATTCACAGACACAGAAGAAGGTGTTTGACGCGGAAACGGCGTCGTCGCTGGTGAAGGAGTTGAGGAAGAACTTTGGTTCGGGAAAGACGCGGAGTTATGAATGGAGAGTTTCGCAGGTGAAGGCTCTCTTGAAAGCGATGACTGATAACGAAGAGGAAATCGTCGATGCTCTTCGTTCAGACCTAGCCAAGCCTTCACTCGAAACCGTCGTGTACGAGATTGGAGTGATTAAAAGCTCGTGTGAAGGGATACTGAAGGAATTGAAGCATTGGATGACGCCAGAAAAGGTCAAAACATCAATCAGAACTTATCCTTCTTCAGCCGAAATAGTACCTGAACCGCTGGGTGTTGTGTTAGTCATCTCTCCATGGAACTATCCAATGTTGTTGGCCCTTGATCCAGTCCTCGGAGCTATAGCAGCTGGTAATGCTGTGGTTCTAAAGCCATCAGAAATTGCTCCAGCCACATCATCACTACTAGAAAAATTGATAGAGAAGTATATGGATCAATCAATTGTAAGAGTTGTCCAGGGGGCAGTCGATGAAACAACTGCCCTATTGCAGCAAAAGTGGGACAAAATTTTCTACACAGGTAATGGAAAAGTTGGAAGAATAGTGATGACTGCTGCTGCAAAACACCTTACACCAGTTTTGCTGGAGCTTGGAGGAAAATCTCCCGTTGTCGTTGATTCAAATATCAACTTGAAGGTAGCAGCAAGACGAATAATTTCTGGCAAGTGGGGATTGAACAATGGACAATCTTGCATTTCTCCCGATTATGTTATAACAACAAAAGACTATGCTCCTAAGTTGGTGGATGCCCTAAAGACTGAATTGCAGGAGTTTTACGGTAAGAATCCGTTGGAATCGGAAGATTTGTCACGAATTGTGAGTTACAACCACTTTGCTCGTTTGTCAAAGCTCTTGAATGATGATAAGGTTTCTGGGAAGATTGTTTATGGAGGTGAAAAAGATGAAAATAAACTAAGGATTGCTCCCACTATTCTATTGGATGTTCCGCGAGATTCTCTGATAATGGGTGAGGAGATATTCGGTCCATTGCTTCCCATCATCACGGTCAATGAACTTGAAGAAAGTCTAGATGTAATCAACTCAGGAGACAAGGCCCTTGCTGCATATATATTTACAACTGACAAGAAGTTCAAGGAGCAGTTCGTAAAGAATGTTTCAGCTGGGGGTTTGCTTGTCAATGACACTTCCATACATGTTGTGGTTGATACTTTGCCATTTGGGGGAGTTGGAGAGAGTGGAATGGGTGCATACCATGGCAAGTTCTCCTTTGATGCTTTTACACACAAAAAGGCTGTTCTTTATCGCAGTTTTGCGGGTGATTCGTCGTCAAGGTACCCACCGTACACGGATACAAAGCAAAGATTGATGAAGGCTCTCATCGCTGGTAGCTTCCTTGGCATACTTCGTGCTCTTTTTGGATGGTCCTAA 1473 0.4379 MSDEDSQTQKKVFDAETASSLVKELRKNFGSGKTRSYEWRVSQVKALLKAMTDNEEEIVDALRSDLAKPSLETVVYEIGVIKSSCEGILKELKHWMTPEKVKTSIRTYPSSAEIVPEPLGVVLVISPWNYPMLLALDPVLGAIAAGNAVVLKPSEIAPATSSLLEKLIEKYMDQSIVRVVQGAVDETTALLQQKWDKIFYTGNGKVGRIVMTAAAKHLTPVLLELGGKSPVVVDSNINLKVAARRIISGKWGLNNGQSCISPDYVITTKDYAPKLVDALKTELQEFYGKNPLESEDLSRIVSYNHFARLSKLLNDDKVSGKIVYGGEKDENKLRIAPTILLDVPRDSLIMGEEIFGPLLPIITVNELEESLDVINSGDKALAAYIFTTDKKFKEQFVKNVSAGGLLVNDTSIHVVVDTLPFGGVGESGMGAYHGKFSFDAFTHKKAVLYRSFAGDSSSRYPPYTDTKQRLMKALIAGSFLGILRALFGWS 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01528 490 PANTHER ALDEHYDE DEHYDROGENASE 17 480 IPR012394 GO:0006081
Vian4g01528 490 FunFam Aldehyde dehydrogenase 26 230 - -
Vian4g01528 490 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 223 230 IPR029510 GO:0016491
Vian4g01528 490 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 26 445 IPR016162 GO:0016491
Vian4g01528 490 PIRSF ALDH 3 484 IPR012394 GO:0006081
Vian4g01528 490 FunFam Aldehyde dehydrogenase 227 427 - -
Vian4g01528 490 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 227 427 IPR016163 GO:0016620
Vian4g01528 490 SUPERFAMILY ALDH-like 21 453 IPR016161 GO:0016491
Vian4g01528 490 Pfam Aldehyde dehydrogenase family 13 447 IPR015590 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01528 Vian-Chr4 30526841 30531185 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01528 78 488 Aldehyde Dehydrogenase Gene Family AT1G44170 69.343 0.0 613