Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01522 ATGGAGTTTGTGGATAACAGAAAACTACAGTTACAACAACAACAACTGCAAAAACAGCCGCAACCGCAGGAGCAACATTTTCATGTGTTGGCAGTGGACGACAGTGTCATAGATAGGAAGCTTTTGGAGAGGCTCCTAAGAGGTTCTTCATGCAAAGTCACCTGCGTGGACTCCGGAGACAAGGCTTTGAAATATCTCGGGTTGGTTGATGACCTTCATGATACTACTTCTTCAACCTCTTTAGAATCATCATCTCCTCCTCCACCTCAACCATTGCAGCAAGAGGGAATCAAAGTGAATTTGATCATGACAGACTATTGCATGCCTGGGATGAGTGGCTATGATTTACTCAAACGAGTCAAGGGATCTTCTTGGAAAGATGTTCCCGTCGTGATTATGTCATCAGAAAATGTACCTTCCAGAATCAGCATGTGCTTGGAAGGAGGGGCAGAAGAGTTTCTGCTGAAGCCTCTTCAGTTATCAGATTTGGACAAGCTTCAGTCATACTTTCTGAAATCCCTTGAAAACTCTTGTGAAAAAGAATCTGCTAACAGTTGCATAGATTCGGAGAATGAGAATGTCATCATTAACATTAGTAACCATAACAGTAACAGTATTAGCAAAAGGAAGGCCATATCTCCGGACTCTCATCAGGAGAGATCAAGACCCAAAATGAAGGAGTTGGCTGTGGTGTAA 696 0.4282 MEFVDNRKLQLQQQQLQKQPQPQEQHFHVLAVDDSVIDRKLLERLLRGSSCKVTCVDSGDKALKYLGLVDDLHDTTSSTSLESSSPPPPQPLQQEGIKVNLIMTDYCMPGMSGYDLLKRVKGSSWKDVPVVIMSSENVPSRISMCLEGGAEEFLLKPLQLSDLDKLQSYFLKSLENSCEKESANSCIDSENENVIINISNHNSNSISKRKAISPDSHQERSRPKMKELAVV 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01522 231 SMART REC_2 27 167 IPR001789 GO:0000160
Vian4g01522 231 Gene3D - 28 226 - -
Vian4g01522 231 SUPERFAMILY CheY-like 27 176 IPR011006 -
Vian4g01522 231 ProSiteProfiles Response regulatory domain profile. 28 171 IPR001789 GO:0000160
Vian4g01522 231 PANTHER TWO-COMPONENT RESPONSE REGULATOR 25 209 IPR045279 GO:0009736
Vian4g01522 231 MobiDBLite consensus disorder prediction 7 23 - -
Vian4g01522 231 MobiDBLite consensus disorder prediction 212 231 - -
Vian4g01522 231 MobiDBLite consensus disorder prediction 206 231 - -
Vian4g01522 231 MobiDBLite consensus disorder prediction 1 23 - -
Vian4g01522 231 CDD REC_typeA_ARR 29 166 - -
Vian4g01522 231 Pfam Response regulator receiver domain 98 164 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01522 Vian-Chr4 30427101 30429559 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01522 24 173 Response Regulator Gene Family AT3G57040 59.603 1.56e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vian4g01522 Response_reg 3.3e-13 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01522 K14492 - gmx:100786187 330.102