Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01511 ATGGCTAGCTTGATGCAACAGCAACCAAAGGGAGTTAATGGAGGTAGTAACCGCATAGTCGCAGTCAATGTCTCTCCCTCTAACAACCTTCCTACACCATCTCAGCACGACGCCTCTTCAAATCATGAGAAGCCTGGGTGGAAAAAGTTCATGTCATATGTGGGTCCTGGCTTTCTGGTTTCCTTGGCTTACCTTGATCCTGGAAACATGGAAACTGATCTGCAAGCTGGAGCTGATCACAAATATGAGCTGCTGTGGGTAATACTCATTGGACTGGTGTTTGCGCTTATTATTCAATCGTTGGCTGCGAATCTGGGCGTAACCACTGGAAAACACCTTTCAGAATTATGTAAAGCGGAATATCCATTATTGGTAAAGTACTGCTTGTGGTTATTAGCTGAGCTCGCTGTCATAGCTGCAGACATACCTGAAGTGATTGGCACAGCCTTCGCGTTGAACATACTTTTCCACATCCCTGTATGGGCAGGAGTTCTCATAACTGGCTGCAGCACCCTCTTATTTCTTGGTCTGCAGAGATTTGGGGTAAGGAAGTTGGAACTGCTGATATCAGTGCTAGTTTTTGTAATGGCTGGATGTTTCTTTGGGGAAATGAGCTACGTAAAACCACCTGCTTCTGGTGTATTGAAAGGAATGTTTGTGCCAAAACTCAGTGGTCAGGGAGCAACAGGGGATGCTATTGCTCTTTTGGGTGCCCTTGTCATGCCGCACAACCTTTTCCTCCACTCTGCTCTGGTCCTGTCTAGAAAAGTACCCAGTTCCGTGCGTGGCATCAATGATGCATGCAGATACTTTCTCATAGAAAGTGGATTTGCATTGTTTGTGGCATTCCTAATCAACGTTGCAATGGTTTCTGTGTCGGGAACTGTTTGCGCTGCTGACAATCTTTCTGCAGCAAACGCTGATCAGTGCAGCGATCTTACCCTTAACTCTGCTTCTTTCCTTCTCAAGAACGTGTTGGGACGGTCGAGCTCTACCATTTATGCTATAGCACTGCTAGCCTCGGGACAAAGTTCAGCCATCACTGGTACCTATGCAGGGCAGTACATCATGCAGGGTTTCTTGGACATGAGGATGAAAACATGGATCAGAAACTTTATGACTAGATGCATTGCCATAACACCTAGTCTTATTGTTTCAATCATTGGGGGTTCTCAAGGAGCTGGTCGGCTCATCATCATTGCATCGATAATTGTGATCTCATGGATTCTGGGCATGGGAATCATTGGCATCAATGTGTACTACCTTTCTACTGCGTTCGTGGGTTGGTTAATTCATAGCAGTCTACCAAAGGTGGCAAATGTGTTGATTGGGATCGTAGTGTTTCCTCTAATGGCACTTTATGTTGGCTCAGTAATATACCTAACATTCAGAAAAGACACTGTTAAGACATATATTGAGACAAAGAATGAAGCAGCAATGGAAAAGGGGTTTATGGTTGATGGTCAATTAGAGTTGAATGAAATTCCTTACAGAGAAGACTTGGCTGATATCCCCTTACCACCATAA 1527 0.4473 MASLMQQQPKGVNGGSNRIVAVNVSPSNNLPTPSQHDASSNHEKPGWKKFMSYVGPGFLVSLAYLDPGNMETDLQAGADHKYELLWVILIGLVFALIIQSLAANLGVTTGKHLSELCKAEYPLLVKYCLWLLAELAVIAADIPEVIGTAFALNILFHIPVWAGVLITGCSTLLFLGLQRFGVRKLELLISVLVFVMAGCFFGEMSYVKPPASGVLKGMFVPKLSGQGATGDAIALLGALVMPHNLFLHSALVLSRKVPSSVRGINDACRYFLIESGFALFVAFLINVAMVSVSGTVCAADNLSAANADQCSDLTLNSASFLLKNVLGRSSSTIYAIALLASGQSSAITGTYAGQYIMQGFLDMRMKTWIRNFMTRCIAITPSLIVSIIGGSQGAGRLIIIASIIVISWILGMGIIGINVYYLSTAFVGWLIHSSLPKVANVLIGIVVFPLMALYVGSVIYLTFRKDTVKTYIETKNEAAMEKGFMVDGQLELNEIPYREDLADIPLPP 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01511 508 Hamap Divalent metal cation transporter MntH [mntH]. 35 426 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vian4g01511 508 Pfam Natural resistance-associated macrophage protein 71 407 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vian4g01511 508 NCBIfam Nramp family divalent metal transporter 55 404 - -
Vian4g01511 508 MobiDBLite consensus disorder prediction 23 43 - -
Vian4g01511 508 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 48 415 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vian4g01511 508 PRINTS Natural resistance-associated macrophage protein signature 182 203 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vian4g01511 508 PRINTS Natural resistance-associated macrophage protein signature 232 255 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vian4g01511 508 PRINTS Natural resistance-associated macrophage protein signature 157 176 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vian4g01511 508 PRINTS Natural resistance-associated macrophage protein signature 370 387 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vian4g01511 508 PRINTS Natural resistance-associated macrophage protein signature 342 361 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vian4g01511 508 PRINTS Natural resistance-associated macrophage protein signature 129 155 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vian4g01511 508 MobiDBLite consensus disorder prediction 23 40 - -
Vian4g01511 508 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 37 405 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01511 Vian-Chr4 30210453 30214829 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01511 15 507 Inorganic Solute Cotransporters AT1G15960 55.009 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01511 K21398 - gmx:100787785 921.768