Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01507 ATGACCACACACAATCGTCGTTCGTCGTTTTCCTCCTCGACGACGTCGTCTTTGGCGAAGCGCCATGCATCCACCACCTCTTCCTCCTCCACCTCATCCTCTTTAGCGGCTCCTACAAACGTGCCAAAGAAGCGTCCACCTCTCTCTAACCTCACCAACACCGTCGCTCACCGGAACTCGTCCTCTTCGGTCCCGTGCGCAGCTAAACTCGCGAAGACGAAGAAAGAGGTTGTTCCGCCCTTCTCAGGCAACAAAAGGCCCACGCTGGTGAATGTCAAACCTACTAATGCGGTTGTTTTTCCCAAGGCTAATTCTCTCCCTCCGAGGAACGAAGCTCCTCCTCCTCCACTTGTTGTCACTGTTACTGTTCCGCCTCCGGTGCTCGATGTTTCACCTTGTAAATCAGATGCAATGTCGGTTTCTATGGATGAGTCGATGTCTTCTTGTGATTCGTTCAAGAGCCCTGACATTGAATATGTGGACAATAGTGATGTGGCGGCTGTTGATTCAATTGAGAGGAAAACTTTCAGCAATCTCAACATATCTGATTCTACCGAATCAGGCAACATTTGTAGTAGAGACATACTTGTTGAGTTGGAAAAAGGGGACAAGTTTGTCAATGTTGATAACAATTACGCTGATCCTCAGCTCTGTGCATCCTTTGCTTGTGATATCTACAAGCACCTTCGTGCATCTGAGGCAAAGAAAAGGCCTTCCACAGACTTCATGGAGAGAATTCAGAAGGACATAAACCCCAGTATGCGTGCAATATTGATTGACTGGCTTGTGGAGGTGGCTGAAGAGTATAGACTAGTACCCGATACATTGTATTTGACGGTAAACTACATTGATCGTTATCTTTCAGGAAATGTGATGAACAGACAAAGGCTACAATTACTTGGTGTTGCCTCCATGATGATTGCCTCTAAATATGAGGAGATTTGTGCACCTCAGGTGGAGGAATTTTGTTACATTACTGATAACACGTACTTCAAAGAAGAGGTTTTGCAGATGGAATCTGCTGTCCTAAATTTTCTCAAGTTCGAAATGACAGCCCCAACGGTAAAATGTTTCTTAAGAAGATTTGTACGTGCTGCTCAAGGAGTCGACGAGGTCACTTCCCTGCAACTTGAGTGCTTGACAAACTATATTGCGGAATTGTCTCTCTTGGAATACAGTATGATTTGTTATGCTCCATCACTTATAGCCGCTTCTGCAATTTTTCTGGCCAAATTTATACTTTTCCCTTCAACGAAACCATGGAATTCCACATTGCAACATTACACGCTCTACCAGGCTTTTGATCTGTGTGTTTGCGTGAAGGATCTCCACCGCCTATGTGGTAACAGCTCTAACTCAAATTTGCCAGCAATAAGGGAGAAATATAGCCAGCACAAGTACAAATACGTGGCCAAGAAGTACTGCCCTCCTTCAATACCCCCAGAATTTTTCCTGAGTTGA 1461 0.4511 MTTHNRRSSFSSSTTSSLAKRHASTTSSSSTSSSLAAPTNVPKKRPPLSNLTNTVAHRNSSSSVPCAAKLAKTKKEVVPPFSGNKRPTLVNVKPTNAVVFPKANSLPPRNEAPPPPLVVTVTVPPPVLDVSPCKSDAMSVSMDESMSSCDSFKSPDIEYVDNSDVAAVDSIERKTFSNLNISDSTESGNICSRDILVELEKGDKFVNVDNNYADPQLCASFACDIYKHLRASEAKKRPSTDFMERIQKDINPSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNVMNRQRLQLLGVASMMIASKYEEICAPQVEEFCYITDNTYFKEEVLQMESAVLNFLKFEMTAPTVKCFLRRFVRAAQGVDEVTSLQLECLTNYIAELSLLEYSMICYAPSLIAASAIFLAKFILFPSTKPWNSTLQHYTLYQAFDLCVCVKDLHRLCGNSSNSNLPAIREKYSQHKYKYVAKKYCPPSIPPEFFLS 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01507 486 ProSitePatterns Cyclins signature. 255 286 IPR006671 -
Vian4g01507 486 FunFam Cyclin A1 340 472 - -
Vian4g01507 486 Pfam Cyclin, C-terminal domain 353 472 IPR004367 -
Vian4g01507 486 SUPERFAMILY Cyclin-like 213 350 IPR036915 -
Vian4g01507 486 CDD CYCLIN_AtCycA-like_rpt2 353 467 - -
Vian4g01507 486 Gene3D - 224 472 - -
Vian4g01507 486 SUPERFAMILY Cyclin-like 353 478 IPR036915 -
Vian4g01507 486 PIRSF Cyclin_A_B_D_E 1 481 IPR046965 GO:0016538|GO:0044772
Vian4g01507 486 SMART cyclin_7 260 344 IPR013763 -
Vian4g01507 486 SMART cyclin_7 357 445 IPR013763 -
Vian4g01507 486 SMART Cyclin_C_2 353 476 IPR004367 -
Vian4g01507 486 Gene3D - 238 351 - -
Vian4g01507 486 CDD CYCLIN_AtCycA_like_rpt1 214 349 - -
Vian4g01507 486 Pfam Cyclin, N-terminal domain 224 350 IPR006671 -
Vian4g01507 486 PANTHER CYCLINS 164 464 IPR039361 -
Vian4g01507 486 FunFam Mitotic cyclin 6 238 338 - -
Vian4g01507 486 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01507 Vian-Chr4 30168713 30171903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01507 4 484 Core Cell Cycle Gene Families AT1G44110 61.837 0.0 569
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01507 K06627 - gmx:100789565 826.624