LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian4g01505	ATGGATGTAGGTTGCATCATGAGCTTATTGAGGCCTTCTGCAATATACAACTTCGTAACAAGTTATCCTGCGCTGCGATGGATGCCGTGTCAGAGTTGGGGCTTCCTTCGATGGCCGGGTCTTGACGGATTCCTTAGGCTTATGGTTGTTGGACTTCTCTGGTCCACGTTTTCTGAGCTTCGCTTCATACCTTCCTCTTCTATGTTCCCCACCCTTCGTGTTGGTGATCGAATTATTGTGGAAAAGGCTTCATATTATATCAAGAATCCTTCTATACATGATATTATAACATTTAAGGATCCAACACAGTTATATGGAGAAAACACAGAAACTGTTTTTATTAAGAGAATTGTAGCAAAAGCAGGAGACGCTGTTGAGGTTCATCATGGGGTACTCTACGTCAATGGTGTTGCTCAGCAGGAAGATTTCATAGCACAACCACCTGCATACACAATTCCTTTAACCACTGTGCCCAATGACCATGTTTATGTGCTAGGCGATAATCGTAATAACAGTTATGATTCTCATGTGTGGGGACCACTTCCTATGAAGAACATAATGGGAAGATATGTCACTTGTTATCATAGACCAACAAACATTTGA	603	0.4179	MDVGCIMSLLRPSAIYNFVTSYPALRWMPCQSWGFLRWPGLDGFLRLMVVGLLWSTFSELRFIPSSSMFPTLRVGDRIIVEKASYYIKNPSIHDIITFKDPTQLYGENTETVFIKRIVAKAGDAVEVHHGVLYVNGVAQQEDFIAQPPAYTIPLTTVPNDHVYVLGDNRNNSYDSHVWGPLPMKNIMGRYVTCYHRPTNI	200

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian4g01505	200	Gene3D	Umud Fragment, subunit A	65	197	-	-
	Vian4g01505	200	CDD	S26_SPase_I	59	189	IPR019533	GO:0004252\|GO:0006465
	Vian4g01505	200	PANTHER	SIGNAL PEPTIDASE I	43	198	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Vian4g01505	200	SUPERFAMILY	LexA/Signal peptidase	57	194	IPR036286	-
	Vian4g01505	200	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	157	176	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Vian4g01505	200	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	113	125	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Vian4g01505	200	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	56	72	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Vian4g01505	200	ProSitePatterns	Signal peptidases I serine active site.	65	72	IPR019756	GO:0004252\|GO:0016020
	Vian4g01505	200	Pfam	Signal peptidase, peptidase S26	45	192	IPR019533	GO:0004252\|GO:0006465
	Vian4g01505	200	FunFam	Peptidase/ serine-type peptidase	65	194	-	-
	Vian4g01505	200	NCBIfam	signal peptidase I	47	194	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Vian4g01505	200	ProSitePatterns	Signal peptidases I signature 3.	162	175	IPR019758	GO:0004252\|GO:0016020

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian4g01505	Vian-Chr4	30154945	30158334	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian4g01505	68	189	MADS-box Gene Family	AT1G29960	30.894	1.56e-07	46.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian4g01505	K03100		-	gmx:100306121	353.599

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vian4g01505	4	30154945	30158334	Vian4g01505	4	30154945	30158334	ECH