Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01488 ATGGGGAGGGGTAAGATTGAGATCAAAAGGATTGAGAACTCAAGCAACAGGCAAGTTACATATTCAAAGAGGAAGAATGGGATCCTTAAGAAGGCAAAGGAAATTAGTGTTCTATGCGATGCTCAAGTTTCCCTTATCATCTTTGGTGCCTCTGGAAAGATGCACGAATACATCAGCCCCTCCACCACGCTGATTGACATCCTAGACAGATACCAAAGAGCCTCTGGGAAGACCCTCTGGGACGCCAAGCATGAGTTCCAAGAACCGGTGATTCTGTGGTTAGATCTAGATTTGGAACATGTAGGCAAGAGTAGTGAGAATAGTTCCATTTTTGTCTTTCTTTCTGGGAACCTCAGCAATGAAATTGATAGACTCAAAAAAGAGAATGACAGCATGCAAATTGAGCTCAGGCACTTGAAAGGGGAAGACATTACGTCACTGAATTACAAGGAACTGATGGCTCTAGAGGATGCCCTTGAAAATGGCCTCAATGGTGTCCGTGGAAGTGCACAGGATGTTCAAGAGAAATGTATGTAG 537 0.4395 MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEISVLCDAQVSLIIFGASGKMHEYISPSTTLIDILDRYQRASGKTLWDAKHEFQEPVILWLDLDLEHVGKSSENSSIFVFLSGNLSNEIDRLKKENDSMQIELRHLKGEDITSLNYKELMALEDALENGLNGVRGSAQDVQEKCM 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01488 178 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vian4g01488 178 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vian4g01488 178 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vian4g01488 178 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vian4g01488 178 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Vian4g01488 178 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Vian4g01488 178 Gene3D - 13 90 IPR036879 GO:0003677|GO:0046983
Vian4g01488 178 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vian4g01488 178 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vian4g01488 178 Pfam K-box region 117 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vian4g01488 178 ProSiteProfiles K-box domain profile. 115 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vian4g01488 178 Coils Coil 115 142 - -
Vian4g01488 178 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vian4g01488 178 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01488 Vian-Chr4 29875106 29876478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01488 1 167 MADS-box Gene Family AT5G20240 58.683 1.69e-62 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vian4g01488 K-box 3.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01488 K09264 - gmx:100795861 248.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01488 4 29875106 29876478 Vian4g01488 4 29875106 29876478 ECH
Vian7g00275 7 8094226 8098162 Vian4g01488 4 29875106 29876478 PCT