Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01487 ATGATTGAGATGGGGTCGTGTGGGAGATCTGCTACCGTTAATGATCCCTCTGGAGGGTCTGTTATTGAGCAGCATTTGTACTCAGAGGTTGCGGAGCAGGTTGTTTCTGTGCAGGAGTCTTGTTTGGAAGTGGCCTGCAATGTTGTGGACTCTAATGCTGACCTCTCCACTGTGACCGATGGTTATGTGGGAGAGGACCTTGTGGGTTCTGCAAGGTGTCTAGATGAGGGGTCTTGTGATGCTCTGGGTTTGGCAAGTGAATGTGAAAATGCTGATTTGTTGTCACTGGAGAAACCCGCTGAAGATGATTGTCTGAATTGTTTGGGGGTTTCTTATGGGGGCATTGAAGTTCCCTGTGCAAGCAGTGGCCCTGAGGGGAATTTTCAGGGTGAGGAAATCTTTGATCTGCGGTCGCGGCCCCTGACTACTGATGATTCCCCGAGGCTTTGTGCTCAGCAGGATGGGCAGAAAGATGATAAGAGCCACGTGTCACCTGCAGCAGGAGATGAGTCCCTCGTTGTGGGAGGCAAAATCGATGACACAGGTCTTCTTGGTGATGTTTTCAATCATGTACTTGATTTCAGGGACTCTGAAATGTCTTTGGAATTAGAATCTGTGGCTGACTTGTTAGTTGATTGCAACCAGCAAAATGAGCAGCAGGAAATTATGAGAAATGCAGATTCCTTGTTCAATGTTGTGGAAAAATGTGATAATCTAATTGGGACAGAAGCTGATGGATGCTGGCAGGTATCTCCTACTGCGGATATGGAAGTGCCATCTGGCGCACTATGTGCAGATACCGAAGTAGAGAGCACAAGTGATCCGAAAGATGGTGAGGTCCATAATAGTACTTGTGAAGAAAAGGTTAAATCTTTTGTTGATGAAGAAATCATTGTCATTAATTCATGTGTAAAAATATCATCCTCTCCAGGTTGCCATGGGACTGTTGAGAGCTCATCTGTAGATTCTCCTTGTGAGCCTGCCTTGTTGGATCCAGGTTGTGAAATGAAGAAAGATGTACTACAAATAGAAGATGCTTTCTGTAAATTGAAGGACTGTTCCTCAGAAGAAACTAGCAACTCTACCTTTAGGGAGCCGTTTTCTCCAGAATCAGGCCTGCCCTCGGTTGCTTCAATTGCCAACTGCTCTTCAAAGGATGTTTCTGATCTCCATTTTAAGGGTGATGATGTTTCTACTCCTGCTACCAATAATGCTGTGGACGATCCAGGGCAGATGGTTAATGATGGAAAAGAAGCACTTAATGTTGATTGTATCACTGAAAGCATTTCATTACTTTCTCAAAGGAATAGTCGAAGAAGTAAAGTAGGCCGCAAGACACAGACCAAAAAGGCTTCAAGAAGAGGCAAGAACAAAACCAAGGTGACATGTCCAAATGGGGATTACATGAAGTTATATTCAGAGGCTGCTAGAAAGAAAAGAACTTGTTTCTCCAAACCAGCTCGTTCTTCTATCTGGGGATTGATTGGGAATATTGAACATTTTTTTGAGCACTATAATGAGCACGCAGTTGGTGAAGCTGTATGTCAAGAATTTGGGAAGGCAAGAAGCAAGCGTCAAAGTGGGAAAACAGTTAAGAATAATGCAAGTACTGGCTCATTGAGTTCAGAACAGAAGTGTCCTGTTTCAACCACCCGTGTTCGTCTAAAGATCAAATTTGGTAAAGAACCCGATTTAAGTTGCTCAAATGTCTTGACTCCTGAGTCTGTTGATGGCTTGGCTTCTGCTTCCTACTTGGAGTCTGGTTCAGCTTCTCAGAAAATAGCCAGCAATCTCGAAGATAAAATGTTGAAAGTGGTGACATTGGGCAATACAGAATCTTTCAACAATAACGTGGATAAGGATGATCTTGTTCGAAATGGACAAGTGGCTAATAGCCCCATAGAAGGACATACTGAAATAACCGAGAAGGCAGATGGAGATGTAGAGGAACATTGTCTTGCAGCTCCTCCAGAGAAGGTGGTTGAGGCACTGATTGAACCTATCAACAACAAGGGTATGGATCCTGGAACTTCACCTGATTCTGAAGTGATCAATTCAATTCCCGAAGTCCATGTTGGAGAGAGACATGAAGATTTACATGATGCTGTTTTAGGTTCTTCTAAAGTGTTAAATTCTATAGTGGATGCCACTGTAAGTAGAAGAGGGAAGAAGAAAGACAAACTTATCAGTTCAGGTATTTGTATCACTGAAGATGAATCTCAAGGTCCACCTAGGAACCGTAGACGGAAGCAGTCAAAGAACCGCAGGGGTAAGAAAAATGGTACGGGTGCAATTAGCTCTTTGGATTTGTCTACTCTCACTCAGATAAGCAAATCTACGAGCAGTAAAGAATTATGCCCTGAATCTTTGTCCCTTTCTGGAGAGACTGAACTTGGACGCACTGCTGAGGCTTTGAAAGTTAAAAATGACATGGACATTAATACAAGTTGCAAACCATCAGTTGACAATGGATTTTCAGAATCTCAGGTTTCTGAGAATATGCCGTCTTCTGCAAGGCCTTTGGGTCGTAAACTACCTAAAAGTCTTAGACCCAGTAAAGTTAGCAGGACCAAATTTAAAGCTTCTGACTCGGCTGACAGGAAAAAGACTACATGTACACGAAAGGAGAAACAGAAAAAGCCAATTGTTAAGTCTGAAGTCAAGAGAAAAGGTGCCTCTCTTAAAATTACATGTGAAATGGAAGATCGCGCACATGCAGAAGCAAATATTGGAAATCATAAACTGGATGCTGTCAGAAAAATTAATGCCGAGGACAACAAAGTATCAGTCAACGTATCTAGTTTGGACACGCTGTCTGGTGTTGGACTGGGTGGGCAACTTCCGTCTCCCCGTAATGCGTGGGTGCGATGTGATGATTGTTACAAATGGAGGCGAATTCCAGCTGTGCTTGCAGACCTAATTGATGAAACTAACCGTACCTGGACATGTAAGGACAGCAGTGATAAAGCTTTTGCTGACTGTGCTGTTCCTCAAGAAAAGTCAAATGCAGAGATTAATGCAGAGTTGGGATTATCAGATGCCTCGGGTGACGAAGATGCATATGAAGGCTCCAAAAATTTTAAGGAATTAGAATATCGGCCTCCATTTGTTTTCCAGGGGTCAACTTTTACCCATATATTCACCAATGAATTCCTGCATCGTAGCCATAAAACTCAGACTATTGATGAGATAATGGTCTGTCATTGCAAGGCACCTCAAGAAGGAAAGTTCGGCTGTGGGGATGAATGCCTAAATCGGATGCTTAATATTGAATGTGCGCAAGGAACATGTCCGTGTGGGGACCGTTGTTCTAACCAGCAGTTCCAAAAACGCAAGTATGCTAGCCTGAGGTGGTTTAAATGTGGGAAAAAGGGTTATGGACTGAAGGCACTTGGCAATGTTGCTAAAGGCCAGTTTCTTATTGAATACGTTGGAGAGGTGCTTGATATGCAAACGTATGAGGCACGGCAAAGGGAATATGCTTTGAAGGGTCATCGACATTTCTATTTTATGACCTTGAATGGCAGTGAGGTAATAGATGCAAGTGCTAAAGGAAACTTGGGGCGTTTCATTAATCATAGTTGTGATCCTAATTGTCGGACAGAGAAGTGGATGGTGAATGGGGAGATCTGTATTGGACTGTTTGCACTGAGGGATATTAAGCAGGATGAAGAATTGACATTTGACTACAACTATGTAAGGGTTTTTGGTGCTGCAGCAAAAAAATGTTATTGTGGTTCACCTAGTTGTCGAGGTTATATAGGTGGTGGTGATCCACTTAATGCTGAACTGATAGTTCAAAGTGATTCAGAAGAAGAATTTCCAGAACCTGTTATGCTTACGAGAGATGGTGAAATTGAAGAGGCACCCAAGTATTTTAATAATGATGATACAGAATCTGCTAGAATTATGTTAAAAGGCAGGGATGTATTGGAAAAGTCGACAAGCGCTATAGATTCAGATGGTTCTCCAGAAAAAGAAAGTTTCATGAACCCTGCCTCTGCTGTTTCTCTGTTGCACAGCTCAGCAGAAATGGATGATTCAAAGGGCAAGTTACCATCTGCCATTCGAGTTGAAGAAATTTCTCAACAAATGGAGGATGTAACAAGCAAACCCATGCCTGCCGTACAAGGATATGAAAAGGAAAAGGAATCAGAGTTTGCAGACAAAACTTCTTCCACTCAAAGATTAGAGACTACTTCTCCCCTTACAGCTGCTAGCAAAATGTTATCTAATTCGACTGGTAGTAATAGGGAATCCAAGTCTGAAATAATTGAAGGCAAGAAGAATCCCAAGTTAAATGGTTCTGTTAAAAAGGGAAAGGTCCATACTAGTCCTCCAAATGGCCTTAAAGCCGAGGTGACAGCCAATCGATTGCAGTTGTCATCTGTCAAACATAAAAAGTTTGAAGGTTCTTCCAATGGACGGTTTGAAGCAGTTCAAGAGAAACTTAATGAGTTGCTGGATGGAGATGGGGGAATAAGCAAAAGAAAGGATGCTACCAAAGGGTACTTGAAGCTTTTGTTTCTTACTGTGGCATCTGGTGATAGAAGCAACGGTGAAGCAATTCAAAGTAATCGAGATCTTTCCATGATACTTGACGCCCTTCTGAAAACAAAATCTAGAGCAGTGCTGAATGATATAATTAACAAAAATGGTTTACAGATGTTACATAACATTATGAAGCAGTACAGGCAGGACTTCAAAAAAATTCCAATACTGCGAAAGCTTCTGAAGGTCTTAGAGTACCTAGCAGCAAGCAAGATTTTGACACCTGAACAGATTAATGGTGGTCCTCCGTGTCATGGGATGGAGAGCCCAATTGGAAGAATGTTCATTATGGAATGGTTGCTCACTGGTAGCGATGTGATAACCACACGGAAGCTGGCATCCTGTGGCTCCAGTGGTGGTGGAGAGATCTCTGACATCATTGAAGCTCTCATATTGACAGTGGTTCCTGTCTCTTTGCTCCTTGGCCTGTCCATTGCTCAAGTTTTGACTTCGTCTCAGTATTGGGTTGTTCATATTGTCTCTGTTGCCTTCATCTACTGCACCTTACTGAACTTTTCAGTGGCACAATCCAATAGGCTTATCCTGCCACTCACGTTTCTTGCCCGAGAACAGATTGGAGCTGCCAGTCTTGCCCTGTGGCATGATTATCCCTTGGATGGGTTTCTGTCTCAATTTTCTGTTCTTACTTCGAGCTTTAGGGAGTCAATGCTTTCTCTGACAGAGCATGATGACAAACAGGTCCATCAAATTGCTCGAAGCTTCCGAGACAGATGGTTTCCCAGACCCAACAGAAAACATGGCTATTTGGACAGGGATGATAATAGAATGGAATCTCATAGAACTTTCAATGGTAACAGATTTTCAGCATCACACTCTCATAGACATGAACAGGATTTAAGGGCTGCAGAAGCAATGGATTGTAGTCAGCAGTCTATGCACGTGACAACTCCAGTAGATGCTGATACCCAGGAAAGCTGTCCTGCCCACTCTGTAGATGGGGTTGAAATCAAAGGACCTAAAAAACGGAAGCGCAAGAGCCGATGGGATCAACCAGCGAAGTCAAACTCACTTTCTGATGCCGTTATGAGCTCCGTTGGTGAAAGCCAGAACATTCATGAGGATGTTCCACCAGGGTTTTCGTGTCCAATAGGTCCACTAAATGCTTCTTCCCTAAACTCTGGCAATCTTGTATTGCAAAATGCAAGCCGTTCTGGATGTCCCTCTGATTTAGTAGTTGGTCATTCAAAAAGGAAATTTAATTCTCGCTTGCCTGTGGCTTATGGAATGCCATGGTCTGTTGCCCAGCAATATGGAACACCTCATACTGAATTTCCAGAGCGCTGGGTCACTGCACCTGGCATACCTTTCGTTCCATTTCCTCCACTACCCCCATATCCTCGAGACAATAAAGACTCTCAACCTTCTAATAATTATAGTGCTATGATAATCGATCAGCCTGCTGAAGCTATGACAAGAGATCACTCTGCTGAAGTCAAGGAGGGTGATAACAGTAGTATGGTCACTTGTTGCGCAGATGATATGATTCCCAGCACAACTAGTGCTAACCCTGAAGAGTCAAACCTTCTGTTTGAGGACAACGAAGCCAAACGAATGAAGGGTGACTCCCATGATTTGGTAACGAAGTACTATAGACAGCAGAAATGGAATAATTCAAAAATACATCGACCATGGTTCCGGAGGAATGCATGGAAATGTAATGAGAACAACTCTAATGGTGATATGTGCAGTATAGATGTAGATGTACCAAAAGAGTCGGAAGATACTTGTGATGCGGAGGATGCAATCTGTAGAGAGGAGAAAGGTGGCAATAATATTTATTAG 6354 0.4285 MIEMGSCGRSATVNDPSGGSVIEQHLYSEVAEQVVSVQESCLEVACNVVDSNADLSTVTDGYVGEDLVGSARCLDEGSCDALGLASECENADLLSLEKPAEDDCLNCLGVSYGGIEVPCASSGPEGNFQGEEIFDLRSRPLTTDDSPRLCAQQDGQKDDKSHVSPAAGDESLVVGGKIDDTGLLGDVFNHVLDFRDSEMSLELESVADLLVDCNQQNEQQEIMRNADSLFNVVEKCDNLIGTEADGCWQVSPTADMEVPSGALCADTEVESTSDPKDGEVHNSTCEEKVKSFVDEEIIVINSCVKISSSPGCHGTVESSSVDSPCEPALLDPGCEMKKDVLQIEDAFCKLKDCSSEETSNSTFREPFSPESGLPSVASIANCSSKDVSDLHFKGDDVSTPATNNAVDDPGQMVNDGKEALNVDCITESISLLSQRNSRRSKVGRKTQTKKASRRGKNKTKVTCPNGDYMKLYSEAARKKRTCFSKPARSSIWGLIGNIEHFFEHYNEHAVGEAVCQEFGKARSKRQSGKTVKNNASTGSLSSEQKCPVSTTRVRLKIKFGKEPDLSCSNVLTPESVDGLASASYLESGSASQKIASNLEDKMLKVVTLGNTESFNNNVDKDDLVRNGQVANSPIEGHTEITEKADGDVEEHCLAAPPEKVVEALIEPINNKGMDPGTSPDSEVINSIPEVHVGERHEDLHDAVLGSSKVLNSIVDATVSRRGKKKDKLISSGICITEDESQGPPRNRRRKQSKNRRGKKNGTGAISSLDLSTLTQISKSTSSKELCPESLSLSGETELGRTAEALKVKNDMDINTSCKPSVDNGFSESQVSENMPSSARPLGRKLPKSLRPSKVSRTKFKASDSADRKKTTCTRKEKQKKPIVKSEVKRKGASLKITCEMEDRAHAEANIGNHKLDAVRKINAEDNKVSVNVSSLDTLSGVGLGGQLPSPRNAWVRCDDCYKWRRIPAVLADLIDETNRTWTCKDSSDKAFADCAVPQEKSNAEINAELGLSDASGDEDAYEGSKNFKELEYRPPFVFQGSTFTHIFTNEFLHRSHKTQTIDEIMVCHCKAPQEGKFGCGDECLNRMLNIECAQGTCPCGDRCSNQQFQKRKYASLRWFKCGKKGYGLKALGNVAKGQFLIEYVGEVLDMQTYEARQREYALKGHRHFYFMTLNGSEVIDASAKGNLGRFINHSCDPNCRTEKWMVNGEICIGLFALRDIKQDEELTFDYNYVRVFGAAAKKCYCGSPSCRGYIGGGDPLNAELIVQSDSEEEFPEPVMLTRDGEIEEAPKYFNNDDTESARIMLKGRDVLEKSTSAIDSDGSPEKESFMNPASAVSLLHSSAEMDDSKGKLPSAIRVEEISQQMEDVTSKPMPAVQGYEKEKESEFADKTSSTQRLETTSPLTAASKMLSNSTGSNRESKSEIIEGKKNPKLNGSVKKGKVHTSPPNGLKAEVTANRLQLSSVKHKKFEGSSNGRFEAVQEKLNELLDGDGGISKRKDATKGYLKLLFLTVASGDRSNGEAIQSNRDLSMILDALLKTKSRAVLNDIINKNGLQMLHNIMKQYRQDFKKIPILRKLLKVLEYLAASKILTPEQINGGPPCHGMESPIGRMFIMEWLLTGSDVITTRKLASCGSSGGGEISDIIEALILTVVPVSLLLGLSIAQVLTSSQYWVVHIVSVAFIYCTLLNFSVAQSNRLILPLTFLAREQIGAASLALWHDYPLDGFLSQFSVLTSSFRESMLSLTEHDDKQVHQIARSFRDRWFPRPNRKHGYLDRDDNRMESHRTFNGNRFSASHSHRHEQDLRAAEAMDCSQQSMHVTTPVDADTQESCPAHSVDGVEIKGPKKRKRKSRWDQPAKSNSLSDAVMSSVGESQNIHEDVPPGFSCPIGPLNASSLNSGNLVLQNASRSGCPSDLVVGHSKRKFNSRLPVAYGMPWSVAQQYGTPHTEFPERWVTAPGIPFVPFPPLPPYPRDNKDSQPSNNYSAMIIDQPAEAMTRDHSAEVKEGDNSSMVTCCADDMIPSTTSANPEESNLLFEDNEAKRMKGDSHDLVTKYYRQQKWNNSKIHRPWFRRNAWKCNENNSNGDMCSIDVDVPKESEDTCDAEDAICREEKGGNNIY 2117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01487 2117 SMART set_7 1114 1237 IPR001214 GO:0005515
Vian4g01487 2117 SMART PostSET_3 1239 1255 IPR003616 -
Vian4g01487 2117 ProSiteProfiles Zinc finger CW-type profile. 948 1002 IPR011124 GO:0008270
Vian4g01487 2117 MobiDBLite consensus disorder prediction 435 460 - -
Vian4g01487 2117 SMART shorttest3 1062 1113 IPR006560 GO:0005634|GO:0042054
Vian4g01487 2117 MobiDBLite consensus disorder prediction 856 883 - -
Vian4g01487 2117 FunFam Histone-lysine N-methyltransferase 1013 1270 - -
Vian4g01487 2117 ProSiteProfiles AWS domain profile. 1062 1112 IPR006560 GO:0005634|GO:0042054
Vian4g01487 2117 MobiDBLite consensus disorder prediction 735 768 - -
Vian4g01487 2117 Pfam AWS domain 1077 1111 IPR006560 GO:0005634|GO:0042054
Vian4g01487 2117 MobiDBLite consensus disorder prediction 820 883 - -
Vian4g01487 2117 MobiDBLite consensus disorder prediction 1769 1797 - -
Vian4g01487 2117 MobiDBLite consensus disorder prediction 1392 1420 - -
Vian4g01487 2117 CDD SET_SETD2 1113 1255 IPR044437 GO:0010452|GO:0046975
Vian4g01487 2117 FunFam Histone-lysine N-methyltransferase 946 1007 - -
Vian4g01487 2117 MobiDBLite consensus disorder prediction 438 457 - -
Vian4g01487 2117 MobiDBLite consensus disorder prediction 144 168 - -
Vian4g01487 2117 MobiDBLite consensus disorder prediction 1820 1869 - -
Vian4g01487 2117 Gene3D - 946 1007 - -
Vian4g01487 2117 MobiDBLite consensus disorder prediction 1855 1869 - -
Vian4g01487 2117 MobiDBLite consensus disorder prediction 1769 1784 - -
Vian4g01487 2117 MobiDBLite consensus disorder prediction 528 544 - -
Vian4g01487 2117 ProSiteProfiles SET domain profile. 1114 1231 IPR001214 GO:0005515
Vian4g01487 2117 Pfam CW-type Zinc Finger 954 1000 IPR011124 GO:0008270
Vian4g01487 2117 Gene3D SET domain 1016 1264 IPR046341 -
Vian4g01487 2117 MobiDBLite consensus disorder prediction 1364 1450 - -
Vian4g01487 2117 SUPERFAMILY SET domain 1042 1252 IPR046341 -
Vian4g01487 2117 ProSiteProfiles Post-SET domain profile. 1239 1255 IPR003616 -
Vian4g01487 2117 Pfam SET domain 1125 1231 IPR001214 GO:0005515
Vian4g01487 2117 MobiDBLite consensus disorder prediction 524 544 - -
Vian4g01487 2117 PANTHER SET DOMAIN PROTEINS 454 1858 - -
Vian4g01487 2117 MobiDBLite consensus disorder prediction 151 165 - -
Vian4g01487 2117 MobiDBLite consensus disorder prediction 820 836 - -
Vian4g01487 2117 MobiDBLite consensus disorder prediction 1377 1391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01487 Vian-Chr4 29820867 29835569 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01487 1097 1254 C2H2 Transcription Factor Family AT2G23740 32.597 9.86e-20 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vian4g01487 SET 1.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01487 - - gmx:100795379 2341.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01487 4 29820867 29835569 Vian4g01487 4 29820867 29835569 ECH