Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01485 ATGCCTCAAACGGCTCCTACCGGAGAACCCTCCCACGGAGGCTCCGGTGGCCGCATGGTGGTAGTGGGGGTGAAGATGGACTCCCCCAGCAAGGAATTGCTCACGTGGGCTTTGGTTAAAGTGGCTCACCCTGGTGACACCGTGGTTGCTCTGCATGTTCTTGGAAACCAGGAAACTGTGAATGGAGACGGGAAATCTTCGCTGCTTTCGCTTGTCAAGGCGTTTGACTCTGTTCTTGCCGTTTATGAAGGATTCTGCAACTTGAAACAGGTCGACCTCAAACTCAAAATTTGCCGTGGTTCATCAGTGAAGAAAATTTTGGTTCGAGAAGCAAATGGTTACTCTGCAACTCATGTTGTGGTCGGAACAACTAATGGTTTGCATAGAATCCGGTCATCTACCTTTGTAGCTAAATACTGTGCTAAAAAGTTGTCCAAGGATTGCTGTATTCTCGCGGTTAACAATGGGAAAGTTGTGTTCAAGCGTGACAGCTCGCCACCGAGTGTTGCTGACTTACAAGGGATTGATCTTCAGCACAGAAATGGTTTGATCGATTTGATTCATTGGACACTCAGTAAGAATACAAAAGTTCTAAGTGATGACAATTCAGGGACGGATGCTGATGAGAAGAAACCTGGCCAAAGTTCAGATCACAGTTTAGCTAAGTTTTTCCTAGATTCTACAGAAACTGTTAGAAAACCGAACTGTTCAATTTGTGGCACAACCTTGGCATTGCCAGACCCTTCTTGCAACCAATCTGAAGAAGGGTTTTCTGGTGATGATGGTAAAGAGAATTCCTTGGCTATAGTACCAGTGCAAGTGCAACCCACTGTTGCTGCAGAAACGGAATTGAAACCTGGTTGGCCACTACTACATCGGAGAATTATATCGGACACACAATCTACTGATAGATCATTGATGCACCCCAAGATTTCCGTGGTCCAGTGGGCAATGAGGTTACCTTCTAGAAATATTTCATATGCTTCAGAACGTGATGAAAAACCTGAAAGTTGTGACCAAAGCCTGGATCAACCTGCGGCTTTAGATAGGGAAAGTGGTGCTCTTGTTCCAATAGATTCTGAAATCGGAACTGCTTCTTCGCCAGAAAGCAATTCAAGAAACATTCCTAAAGAATTGGAGGGCCTTCACGAGAAGTACTCCTCAAGTTGTAGATTGTTTGGGTACCAAGATCTTGTATCTGCCACATCAAATTTCTTACCGGAAAACTTTATTGGGAAAGGAGGAAGCAGTCAGGTTTTTAGAGGCTGCCTTTCTGATGGCAAGGAACTTGCTGTCAAGATTCTAAAGCCTTCCGAAGATGTATTGAAGGAATTTATTCTGGAAATCGAAATCATCACTACCTTGCATCACAAAAACATAATTTCCCTCCTGGGATTCTGCTTTGAGAATGGCAAATTTCTTCTGAAAAGTTCACTTGCGTTTGGTTGGTCGGAGAGATATAAGGTAGCTGTGGGTATTGCTGAGGCTTTAGATTATCTGCATTCTAAAGACGATCAACCCGTGATCCATCGGGATGTAAAGTCATCGAATGTGTTATTATCCGAGGATTTTGAACCCCAGCTTTCTGATTTTGGACTGGCAAAATGGGCATCAACCTCGTCATCACAAATAACCTGCACAGATGTTGCTGGAACCTTTGGTTACTTGGCTCCTGAATACTTCATGTACGGCAAAGTAAATGATAAGATTGATGTTTATGCATATGGGGTGGTGCTCCTTGAACTTCTTTCGGGGAGAAGGCCCATAAACCGTGATTATCCTAAAGGCCAAGAGAGTCTTGTCATGTGGGCAAGTCCAATTCTAAATAGTGGAAAGGTGTTACAATTGTTAGATCCTAGTTTGGGTGATAACTATGATCATGAGGAGATGGAAAAGATGGTGTTGGCAGCCACACTGTGTATCAAACGTGCTCCAAGGGCTAGGCCTCAAATGAACCTTTGTAATTTCCTGGACAATGACCTGAATGTTTGCCTTTTGCTTATCCTAAATCCTGTGATCTTAAAGCTCCTTCAAGGTGACATTGAAACAATGAAGTGGGCAAGGTTAGAAGTTAACAATGGTTTGGATGCAGCAGAAACGGTTGATGATGAAGCGTGTCCACCTAGTGATAATCTGCAGTCACATATAGATCTTGCACTGCGTGATGTGGTGGAGGAGTCACTCTCCATGTGCAGTGTTGAGCAGGGTTTGACATTGGAGGACTACTTGAGAGGCCGTTACAGCCGTGCATCAAGCTTTGACTGA 2265 0.4406 MPQTAPTGEPSHGGSGGRMVVVGVKMDSPSKELLTWALVKVAHPGDTVVALHVLGNQETVNGDGKSSLLSLVKAFDSVLAVYEGFCNLKQVDLKLKICRGSSVKKILVREANGYSATHVVVGTTNGLHRIRSSTFVAKYCAKKLSKDCCILAVNNGKVVFKRDSSPPSVADLQGIDLQHRNGLIDLIHWTLSKNTKVLSDDNSGTDADEKKPGQSSDHSLAKFFLDSTETVRKPNCSICGTTLALPDPSCNQSEEGFSGDDGKENSLAIVPVQVQPTVAAETELKPGWPLLHRRIISDTQSTDRSLMHPKISVVQWAMRLPSRNISYASERDEKPESCDQSLDQPAALDRESGALVPIDSEIGTASSPESNSRNIPKELEGLHEKYSSSCRLFGYQDLVSATSNFLPENFIGKGGSSQVFRGCLSDGKELAVKILKPSEDVLKEFILEIEIITTLHHKNIISLLGFCFENGKFLLKSSLAFGWSERYKVAVGIAEALDYLHSKDDQPVIHRDVKSSNVLLSEDFEPQLSDFGLAKWASTSSSQITCTDVAGTFGYLAPEYFMYGKVNDKIDVYAYGVVLLELLSGRRPINRDYPKGQESLVMWASPILNSGKVLQLLDPSLGDNYDHEEMEKMVLAATLCIKRAPRARPQMNLCNFLDNDLNVCLLLILNPVILKLLQGDIETMKWARLEVNNGLDAAETVDDEACPPSDNLQSHIDLALRDVVEESLSMCSVEQGLTLEDYLRGRYSRASSFD 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01485 754 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 20 125 - -
Vian4g01485 754 CDD USP_Like 20 153 - -
Vian4g01485 754 ProSiteProfiles Protein kinase domain profile. 405 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01485 754 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 374 477 - -
Vian4g01485 754 MobiDBLite consensus disorder prediction 328 350 - -
Vian4g01485 754 SMART serkin_6 405 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01485 754 PANTHER OS08G0249100 PROTEIN 75 655 IPR046958 -
Vian4g01485 754 Gene3D Phosphorylase Kinase; domain 1 369 473 - -
Vian4g01485 754 ProSitePatterns Protein kinases ATP-binding region signature. 411 433 IPR017441 GO:0005524
Vian4g01485 754 FunFam Putative receptor-like serine/threonine-protein kinase 468 666 - -
Vian4g01485 754 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 17 154 - -
Vian4g01485 754 Gene3D Transferase(Phosphotransferase) domain 1 474 661 - -
Vian4g01485 754 ProSitePatterns Serine/Threonine protein kinases active-site signature. 508 520 IPR008271 GO:0004672|GO:0006468
Vian4g01485 754 SUPERFAMILY Protein kinase-like (PK-like) 386 665 IPR011009 -
Vian4g01485 754 Pfam Universal stress protein family 20 148 IPR006016 -
Vian4g01485 754 Pfam Protein kinase domain 409 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01485 754 Gene3D HUPs 18 154 IPR014729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01485 Vian-Chr4 29787005 29790422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01485 311 666 Trihelix Transcription Factor Family AT1G68690 36.053 2.05e-63 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vian4g01485 Pkinase 2e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01485 - - pcin:129303222 969.148