Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01475 ATGCTGTGGCGGTGCAATGGTGGTTCGTTAGTGGTGCTTTGGTGGTGCTTCGATGCGTCTACTATGCAGTTTCGTCTAGGGGAGAGTCTAAATCCTCCAGTAGGTCTTTCTCCAAAGCAAGGAACGAGCCAAGGAGTTCGAGGAAATGTTGTCGACAACTTCAGAGCTGGAAAAACATGGGTTTTGATTGCTACTGATGTGGTTGCACGGGGCATGGATTTCAAAGGAGTGAATTGTGTGATCAATTATGATTTCCCTGATTCTGCCTCCACATACGTCCACATATTGGTATATGCAGCTATACTAAAAGCAGGGAGGAGTGGAGAAGCGATTACTTTTTACATAGAGGAAGACATTTCATTGTTGCGGAATGTTGCTAATCTAATGGCAGCATCGGGCTGTGAAGTTCCGCCCTGGCTCATGGAGTTGCAAAAAAGAAATGGAAGAAATACCGGCCCAAAAGAGATTCAGTCTCAATAA 480 0.4521 MLWRCNGGSLVVLWWCFDASTMQFRLGESLNPPVGLSPKQGTSQGVRGNVVDNFRAGKTWVLIATDVVARGMDFKGVNCVINYDFPDSASTYVHILVYAAILKAGRSGEAITFYIEEDISLLRNVANLMAASGCEVPPWLMELQKRNGRNTGPKEIQSQ 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01475 159 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 144 IPR001650 -
Vian4g01475 159 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 40 144 - -
Vian4g01475 159 CDD SF2_C_DEAD 43 114 - -
Vian4g01475 159 SMART helicmild6 20 108 IPR001650 -
Vian4g01475 159 Gene3D - 35 148 IPR027417 -
Vian4g01475 159 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 41 148 IPR027417 -
Vian4g01475 159 Pfam Helicase conserved C-terminal domain 42 95 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01475 Vian-Chr4 29547045 29548772 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01475 44 143 Eukaryotic Initiation Factors Gene Family AT3G19760 37.000 1.41e-15 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01475 K14779 - gmx:100800969 163.696