Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01467 ATGACCTCTCCTTTATTTGAATCTTTCCATTACACTAAAATTACAATAGTTTTGTCCTTTGTCTGTATAAGGCGCTTGTTATTAAATGTTTCATCAGCAACTGAGAAAGTAATTGTTTACACTTCTCGATGTTCAGGTGTGAGTGGAAGTATATTGACACTTATGGGAGGAACCTTATGCATGTACTGCACATTAAAGAAAAGAAAACTCAACAAACTTAAAGAACATTTTTTTCAACTAAACGGTGGTTTGTTATTACAACAACATATAGGCAGGTACAGTGGATCAAATGAATTGACAAAAATCTTTACTGAGAAAGAACTAAAAGAGGCCACCAACAATTTCAATGAAGAGATGGTCTTAGGCAAAGGTGGGGAGGGAACAGTTTACAAAGGAATATTACCTGACAATAGAATTGTAGCAATAAAAAGGTCCAGAGTTAGTAACCCAAACCAAACTGAGCATTTCATCAATGAGGTGATTCTGCTTTGTCAAATCAACCATAGAAATGTGGTGAAACTCTTGGGATGTTGTTTAGAGACAAAGGTTCCCTTACTTGTTTATGAATTTGTTCCCAATGGAACTGTTTACGAGCATCTCCATGATCAAAGCAAATCTTTAAGACTTACATGGAAAAGAAGATTACAAATAGCAGTTGAAACTGCTGGGGCCCTAGCATACTTGCATTCTGCTACCCATGCACCAATCATACATAGAGATGTGAAAACTTCAAACATACTACTTGATCACAATCTCACTGCAAAGGTTTCTGATTTCGGAGCTTCAAAGATTATTCCTCTTGATCGAACTCAGTTAACAACTTTGGTGTTGGGGACACTAGGGTATCTTGACCCAGAATACTTCCACTCAAGCCAGTTAACAGAGAAAAGTGATGTCTACAGTTTTGGAGTTGTCCTAGTCGAACTACTAACAGGAAAGAAGGCACTCTCTTTTGAAAGGCCAGAGGCTCATAGAAACCTAGCGATTCACTTCCATTCTTCAATGAAGGAGGGTCGGTTACTTGAAATTTTTGATGACCGCATAATAGATGAGGCAAATGTTGAGCAGCTAATGGATGTTGTAAACATTGCAAGCCATTGTTTAAGGTTGAAGGGGGAGGAAAGGCCCACCATGAGAGAAGTGGCAATGCAACTTGAAGGAATCAATATTGTGGAGAAGCACCAATGGGAAAACGTGAACTTGTCATTAGAGAATGCTGAATCTATTCTCAAAGCAACACCATCATCTTCTTTTAGTGTAGATGGTGTTAACAACATAAGCATGCATTCTGGCTCTGATGTTTTAAACCAAATTTCCTTCTCCTTAACTAGAGGAAGATGA 1341 0.3811 MTSPLFESFHYTKITIVLSFVCIRRLLLNVSSATEKVIVYTSRCSGVSGSILTLMGGTLCMYCTLKKRKLNKLKEHFFQLNGGLLLQQHIGRYSGSNELTKIFTEKELKEATNNFNEEMVLGKGGEGTVYKGILPDNRIVAIKRSRVSNPNQTEHFINEVILLCQINHRNVVKLLGCCLETKVPLLVYEFVPNGTVYEHLHDQSKSLRLTWKRRLQIAVETAGALAYLHSATHAPIIHRDVKTSNILLDHNLTAKVSDFGASKIIPLDRTQLTTLVLGTLGYLDPEYFHSSQLTEKSDVYSFGVVLVELLTGKKALSFERPEAHRNLAIHFHSSMKEGRLLEIFDDRIIDEANVEQLMDVVNIASHCLRLKGEERPTMREVAMQLEGINIVEKHQWENVNLSLENAESILKATPSSSFSVDGVNNISMHSGSDVLNQISFSLTRGR 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01467 446 ProSiteProfiles Protein kinase domain profile. 115 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01467 446 FunFam Wall-associated receptor kinase 2 85 190 - -
Vian4g01467 446 SMART serkin_6 115 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01467 446 Gene3D Transferase(Phosphotransferase) domain 1 191 409 - -
Vian4g01467 446 Gene3D Phosphorylase Kinase; domain 1 91 190 - -
Vian4g01467 446 SUPERFAMILY Protein kinase-like (PK-like) 99 391 IPR011009 -
Vian4g01467 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
Vian4g01467 446 CDD STKc_IRAK 121 388 - -
Vian4g01467 446 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 39 391 IPR045274 GO:0007166
Vian4g01467 446 FunFam Wall-associated receptor kinase 2 191 408 - -
Vian4g01467 446 Pfam Protein kinase domain 116 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01467 Vian-Chr4 29433378 29434718 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01467 25 428 Receptor kinase-like Gene Family AT1G21250 50.608 7.20e-140 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vian4g01467 Pkinase 3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01467 - - vum:124835050 771.155