Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01450 ATGTCATTAGTTAGGTCTGCTGATGTTAGACCAGGCTTGTCCTCTCAAATTTTTGGTCCTGATAAGCATAGGAGCATGTACATGACAGATTCTTACTCCAGCGAGAGTTATGAGAAGTACTTCAATGACTCTCAAACAGAAGAACTGATAGAACCATCTAACTCCAGCATCTCTGAAAGTTCAATCCCCCCTGATGTGGCCTCTTCTTACCAGCTTACGGCCAGTTCAGAAGCTTCTGTGGTTGCCAATAACCCATTTGATTGTTCTTTCATGTCCACAGTTACACACGATGTTTATGAGGCAAACTATGGATCAGATTTGATGGAGAATGGAAGCCTCGATTCCCGTGAAAATGATGGTCTAATGAGTTTAAAACTACAAGCATTAGAGAGGGCATTGCTTGATGACAGTGAGGCTGAGGAGGAGGAGCTTGAAGAGGAAGACATATTTGAGGCTGTTCAAAGCATGGAAATTGATCCAGACATTGCAGAGTGGTCTGATTCCATGCAGAATATGGTCCTCCATGATTCACCAAAGGAGTACTCTTCTTCAGATTCCAGCATCAGCAGCATCATCAGCAGCACCAAAGAAATATCACAAATTTCTCAGACCCCAAGGCAGCTGCTTTATGAATGTGCTATTGCACTTTCAGAAGGAAACGAAGAGGAAGGATCATCCATGATAAACAATCTCAGACAGATGGTGTCAATTCAAGGAGAGCCTTCTCAAAGAATTGCAGCCTATATGGTTGAGGGGCTAGCAGCTCGCCTAGCGGAATCCGGCAAAAGTATTTACAAAGCTCTGAGATGCAAGGAACCACCTTCTTCAGATCGTCTAGCAGCCATGCAGATACTGTTTGAGGTTTGCCCATGTTTCAAATTTGGATTTATTGCTGCTAACAATGCAATTACAGAAGCAGTGAAAGATGACATGAACATTCATATCATAGACTTTGACATCAACCAAGGAAGTCAGTACATTAATCTAATCCAAACACTTGCTTCAAGGTCAAGTAAGCCACCCTATGTTAGATTGACTGGGGTTGATGATCCTGAGTCCGTGCAGCGATCTGTTGGAGGCCTAAAGAACATAGGACAAAGACTAGAAAAACTGGCAGAGGCACTTGGTCTGCCATTTGAGTTCCGAGCAGTGGCATCAAGGACTTCCATTGTCACCCCATCAATGCTCAACTGTAGTCCTGGGGAAGCACTTGTGGTGAACTTTGCATTCCAGCTTCACCACATGCCTGATGAGAGTGTTTCAACAGTAAACGAACGGGACCAACTTCTTCGTTTGGTGAAGAGCTTGAATCCAAAGCTTGTGACAGTTGTGGAGCAAGATGTGAACACAAACACTACCCCCTTCTTGCCTAGATTTGTTGAAGCCTACAATTACTACTCTGCTGTGTTTGAGTCACTTGATGTTACCCTTCCAAGAGAAAGCCAGGACAGGATGAATGTTGAAAGGCAATGCTTGGCCAGAGACATTGTCAATGTTGTTGCATGTGAGGGTGAGGATAGGATAGAACGATATGAAGTGGCAGGAAAATGGAGAGCAAGGATCACAATGGCTGGCTTCACTTCATCTCCAATGAGCACAAATGTGACTGATGAAATCAGAAACCTCATTAAGGTGATGTATTGTGACAGGTACAAGATTAAGGAGGAAATGGGTGCACTTCACTTTGGTTGGGAAGACAAAAACTTGATCGTTGCTTCGGCATGGAAGTTACCAAGATAA 1740 0.4368 MSLVRSADVRPGLSSQIFGPDKHRSMYMTDSYSSESYEKYFNDSQTEELIEPSNSSISESSIPPDVASSYQLTASSEASVVANNPFDCSFMSTVTHDVYEANYGSDLMENGSLDSRENDGLMSLKLQALERALLDDSEAEEEELEEEDIFEAVQSMEIDPDIAEWSDSMQNMVLHDSPKEYSSSDSSISSIISSTKEISQISQTPRQLLYECAIALSEGNEEEGSSMINNLRQMVSIQGEPSQRIAAYMVEGLAARLAESGKSIYKALRCKEPPSSDRLAAMQILFEVCPCFKFGFIAANNAITEAVKDDMNIHIIDFDINQGSQYINLIQTLASRSSKPPYVRLTGVDDPESVQRSVGGLKNIGQRLEKLAEALGLPFEFRAVASRTSIVTPSMLNCSPGEALVVNFAFQLHHMPDESVSTVNERDQLLRLVKSLNPKLVTVVEQDVNTNTTPFLPRFVEAYNYYSAVFESLDVTLPRESQDRMNVERQCLARDIVNVVACEGEDRIERYEVAGKWRARITMAGFTSSPMSTNVTDEIRNLIKVMYCDRYKIKEEMGALHFGWEDKNLIVASAWKLPR 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01450 579 Coils Coil 127 147 - -
Vian4g01450 579 ProSiteProfiles GRAS family profile. 196 576 IPR005202 -
Vian4g01450 579 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 173 571 IPR005202 -
Vian4g01450 579 Pfam GRAS domain family 206 576 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01450 Vian-Chr4 29162792 29164531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01450 1 576 GRAS Transcription Factor Family AT1G21450 59.098 0.0 666
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vian4g01450 GRAS 2.1e-135 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01450 - - gmx:100788103 964.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01450 4 29162792 29164531 Vian4g01450 4 29162792 29164531 ECH
Vian7g00208 7 6512338 6513705 Vian4g01450 4 29162792 29164531 PCT