Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01442 ATGAAAGGGTGTTGGTTAGTTGGGGTGTTGATTGTGTTGTTGGGCAGTGTTGGGGTAGAAGGGTACCCTTCTGAGGATCTGATAGAGAAGTTGCCTGGGCAACCTAATGTTGGATTCAAGCAATATGCAGGATATGTGGATGTAGACGTCAAACATGGAAGAAGCCTCTTCTACTATTTTGTGGAGGCTGAGAAAGACCATGAAAAGAAACCCCTCACTCTTTGGCTCAATGGAGGCCCAGGATGTTCCTCCATTGGAGGAGGTGCCTTTACTGAATTGGGTCCCTTTTATCCCAGAGGTGATGGACGTGGTCTTCGAAGAAATTCAATGTCTTGGAATAGAGCATCCAACCTCCTTTTCTTGGAGTCTCCAGCTGGAGTTGGTTGGTCATACTCAAACACAACTTCAGATTACAACGCTGGCGATGCATCCACAGCCAATGATACGCTTCTCTTCCTGCTGAAATGGTACGAGAAGTTTCCTTCTTACAGATCAAGGGAGCTGTTTCTTACCGGAGAAAGCTATGCAGGACATTATATACCACAGTTAGCCAATGTTCTTTTGGACCACAATGCTCATTCAAATGGTTTCAAATTCAATATTAAAGGAGTAGCTATTGGAAACCCACTTCTGAAACTTGATCGTGATGCACGAGCAACATACGAATACTACTGGTCGCATGGACTGATCTCCGATGAAGTTGGCCTTGCCATAGCGAATGATTGCGATTTCGATGACTATGTCTTCGCTGATACACACAACGTGTCCAAATCATGCAACAATGCAATAAATGAGGCAAACGAGATTGTTAGCGATTACATAAACTACTATGATGTGATTCTGGATGTTTGTTATCCATCCATAGTTGAACAAGAACTGAAATTGAAAAAGATGGCTACTAAAATAAGCATAGGTGTAGATGTATGCATGACTTACGAAAGAGCTTTTTATTTCAATCTCCCAGAGGTTCAGAAGGCTCTCCATGCAAACCGTACTAATCTTCCCTACCGCTGGTCCATGTGCAGTGGTGTCTTGAATTATAGCGAGACTGATCCTAATATAGACATCCTCCCTGTTCTCAAAAGGATAGTTCAAAACCATATTCCAGTATGGGTTTTCAGTGGAGACCAAGATTCTGTGGTGCCGTTACTAGGTTCTCGAACACTCATTCGTGAACTAGCTCACGAGCTAAAGTTCAAGATTACAGTACCATATGGAGCATGGTTCCACCGAGGGCAGGTTGGAGGTTGGGTAACAGAGTATGGAAATTTGTTGACTTTTGCAACTGTAAGAGGAGCTGCTCACATGGTACCATTTGCACAGCCTTCAAGAGCACTCCATCTCTTTAGTTCTTTTGTGCATGGAAGGAGATTGCCAAACACTACACGCCCTTCAATTTACGATTAA 1407 0.4335 MKGCWLVGVLIVLLGSVGVEGYPSEDLIEKLPGQPNVGFKQYAGYVDVDVKHGRSLFYYFVEAEKDHEKKPLTLWLNGGPGCSSIGGGAFTELGPFYPRGDGRGLRRNSMSWNRASNLLFLESPAGVGWSYSNTTSDYNAGDASTANDTLLFLLKWYEKFPSYRSRELFLTGESYAGHYIPQLANVLLDHNAHSNGFKFNIKGVAIGNPLLKLDRDARATYEYYWSHGLISDEVGLAIANDCDFDDYVFADTHNVSKSCNNAINEANEIVSDYINYYDVILDVCYPSIVEQELKLKKMATKISIGVDVCMTYERAFYFNLPEVQKALHANRTNLPYRWSMCSGVLNYSETDPNIDILPVLKRIVQNHIPVWVFSGDQDSVVPLLGSRTLIRELAHELKFKITVPYGAWFHRGQVGGWVTEYGNLLTFATVRGAAHMVPFAQPSRALHLFSSFVHGRRLPNTTRPSIYD 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01442 468 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 28 442 IPR001563 GO:0004185|GO:0006508
Vian4g01442 468 FunFam Carboxypeptidase 22 286 - -
Vian4g01442 468 Gene3D alpha/beta hydrolase 23 285 IPR029058 -
Vian4g01442 468 SUPERFAMILY alpha/beta-Hydrolases 24 458 IPR029058 -
Vian4g01442 468 Gene3D - 309 345 - -
Vian4g01442 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 425 438 IPR001563 GO:0004185|GO:0006508
Vian4g01442 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 156 181 IPR001563 GO:0004185|GO:0006508
Vian4g01442 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 108 120 IPR001563 GO:0004185|GO:0006508
Vian4g01442 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 121 131 IPR001563 GO:0004185|GO:0006508
Vian4g01442 468 ProSitePatterns Serine carboxypeptidases, serine active site. 170 177 IPR018202 GO:0004185
Vian4g01442 468 Gene3D - 356 455 - -
Vian4g01442 468 FunFam Carboxypeptidase 356 455 - -
Vian4g01442 468 Pfam Serine carboxypeptidase 33 455 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01442 Vian-Chr4 28961774 28964797 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01442 316 458 Calmodulin-binding Proteins AT2G22960 24.658 2.15e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01442 K16297 - gmx:100815723 863.988