Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01429 ATGTCAAGCAATGCATTAACTCTTTTTATCTTGTTTCTTAATATCTCCTTGTGTCCTTCCATCTCTGCTCTGAACCAGGAAGGCCTCTCTCTACTGTCATGGCTTTCAACCTTTAACTCCTCCGACTCTGTCGCTTCCTTCTCTTCATGGGATCCAACCAACAAAGATCCTTGCACATGGGATTACATAACATGTTCCAAAGAAGGGTTTGTGTCAGAGATCATAATAACATCCATAGATATGCGTAGCAGCTTCCCCACTCAGGTCCTTTCTTTTGGCCACCTCACCACTCTTGTCATCTCAAATGGAAATCTCACAGGTGAGATTCCAGGTTCAGTGGGAAACTTGTCCTCCTTGGTCACTTTGGATCTTAGCTTCAATGCTTTGTCAGGAAGCATTCCAGAAGAAATAGGAATGCTAGCTAAGCTGCAGTTGTTATTGTTGAATTCCAATTCCTTGAAGGGTGGAATTCCAACTACTATTGGAAACTGTTCAAAGCTTCAGCATCTGGCACTTTACGACAACCAGCTATCTGGAATGATACCTGGAGAAATAGGCCAGTTGAGTACTCTCGAAACTCTTAGAGCAGGAGGAAATCCAGGTATTCATGGAGAAATTCCAATGCAGATATCAGACTGCAAGGCCCTTGTTTTTCTGGGACTTGCAGTTACTGGGGTTTCTGGGGAGATTCCACCGAGTATAGGAGAGCTTAAAAATCTCAAGACACTTTCAGTCTACACGGCGCATCTCTCAGGTCATATCCCACCAGAGATTCAGAACTGCTCAGCCTTGGAGGATTTGTTTCTGTATGAAAACCAGCTTTCTGGAAACATTCCTTATGAATTGGGCTCCATGCAAAACCTGAGGAGGGTGTTGCTGTGGCAGAACAATTTAACTGGGACCATTCCGGAAAGTCTTGGGAACTGTACAAATCTCAAGGTTATAGATTTCTCTTTGAATTCTTTGGAGGGTCAGATACCTGTGACTCTCAGTAATCTACTCTTTCTGGAGGAGTTTCTTTTGTCTGATAATAGTATTTATGGAGAAATACCTTCCTATGTTGGCAACTTTTCCAGGCTAAAGCAACTTGAATTGGATAACAACAAATTCTCCGGGAACATTCCACCTGTTATGGGACAACTGAAGGAACTCACCCTCTTTTATGCCTGGCAGAATCAACTTAATGGAAGTATACCAACAGAAATATCCAACTGTGATAAACTTGAAGCACTTGATCTTTCGCACAATTTCCTCACTGGCTCCATTCCAAGTGCACTCTTTCATCTGCGGAATTTGACTCAGTTGTTGCTGATATCAAACAGACTTTCAGGTCAAATTCCAGCTGATATTGGCAGTTGCACTAGTTTGATCAGGTTACGGCTGGGATCAAATAACTTTACTGGTCAAATTCCACCAGAAATAGGTCATTTAAGAAGTTTGAGCTTCCTTGAGTTATCAAATAATCAACTCAGTGGAGATATTCCCTCTGAGATAGGAAACTGTGCTCATCTAGAATTGCTTGACTTGCACAGCAATGTGCTGGAAGGAACCATTCCTTCATCTTTGAAATTCCTAGTTGGTCTCAATGTCTTAGATCTTTCGGCAAACAGATTAACGGGAAGCATTCCGGAGAATCTGGGCAAACTTAAATCTCTAAATAAGTTGATTTTAAGTGGAAACATTATCTCTGGTGTGATCCCAGGGACACTGGGGCAGTGTAAGGATTTGCAGTTGCTGGATATAAGTAACAATAGGATCACTGGTTCTATTCCACATGAGATTGGTCATTTGCAAGGATTAGATATCCTCTTGAACTTGAGTTGGAATTCTCTTAGTGGCCCCATTCCACAGACCTTCTCAAATCTCTCAAAACTATCCATCTTGGACCTCTCTCACAACAAGCTCACAGGTACACTCACGGTATTGGTTAGTCTTGACAATCTTGTGTCTCTAAATGTCTCCTATAATAGCTTTTCTGGTTCTCTTCCTGATACAAAGTTTTTCCGGGATCTACCCTCCGCTGCATTTGCTGGTAACCCTGACCTTTGCATTAGCAAGTGTCATACAAGTGAAAATGGCCAGGGCTTCAACAAGTCAATAAGAAATGTTATTGTCTACACTTTCCTTGGGGTTGTTTTAACTTCTATTTTTGTCACTTGTGGAGTAATTTTAGCTCTCCGGATTCATGGGGGAAACTTTGGCAGGAATTTTGATAGTAATGAAATGGAATGGGCTTTCACTCCATTCCAGAAAGTCAACTTCTCCATCGATGACATTTTAACAAAGTTGTCAGAATCAAACATTGTCGGAAAGGGTTGCTCAGGAATTGTTTATCGCGTAGAGACTCCAACGAAACAGATTATTGCAGTGAAGAAGCTATGGCCAATAAAGAAGGAAGAGCCACCAGAGAGAGATCTGTTTACTGCAGAAGTTCAGACCCTTGGATCAATAAGACACAAGAATATAGTGAGACTTTTAGGTTGCTGTGACAATGGAAGAACTAGATTGCTCTTGTTTGATTACATATGCAATGGAAGTTTGTTCGGACTGCTTCATGAGAAGAGATTGTTCTTGGATTGGGATGCCAGGTATAAGATCATACTGGGAACGGCTCATGGTTTAGAATATCTTCATCATGATTGTATCCCTCCAATCGTCCACAGGGATATTAAGGCAAACAACATCTTAGTAGGTCCACAATATGAAGCTTTTCTTGCAGATTTTGGCCTTGCAAAGCTCGTGAATTCCTCAGAGTGTTCAGGGGCCTCTCATACAGTGGCAGGTTCTTATGGATACATTGCTCCTGAATATGGATACAGTTTAAGGATCACAGAAAAGAGTGATGTGTACAGTTTCGGTGTTGTACTTCTTGAGGTCTTAACGGGGATGGAACCAACTGATAACAGTATTCCAGAGGGTGCCCACATTGTCACATGGGTTAGCAACGAAATCCGAGAGAAAAGAAGGGAATTTACATCTATCCTTGATCAGCAACTAGTATTGCAGAGTGGAACCAAAACCTCTGAGATGCTTCAAGTTCTAGGAGTGGCTCTCCTCTGCGTGAATCCATCACCAGAAGAAAGGCCTACTATGAAAGACGTAACAGCAATGCTCAAGGAGATCAGGCTCGAAAGTGATGACTTCGAAAAATCAAATTTTCTCCATAAAGGCATGGTTGTGAATCCAAAAGCAGCAGTTCACTGTTCAAGTTTCTCCAGATCATGTGAACCTTTAATAATAGAATCAACATCTTCTTCTTCTTCTTAG 3267 0.4166 MSSNALTLFILFLNISLCPSISALNQEGLSLLSWLSTFNSSDSVASFSSWDPTNKDPCTWDYITCSKEGFVSEIIITSIDMRSSFPTQVLSFGHLTTLVISNGNLTGEIPGSVGNLSSLVTLDLSFNALSGSIPEEIGMLAKLQLLLLNSNSLKGGIPTTIGNCSKLQHLALYDNQLSGMIPGEIGQLSTLETLRAGGNPGIHGEIPMQISDCKALVFLGLAVTGVSGEIPPSIGELKNLKTLSVYTAHLSGHIPPEIQNCSALEDLFLYENQLSGNIPYELGSMQNLRRVLLWQNNLTGTIPESLGNCTNLKVIDFSLNSLEGQIPVTLSNLLFLEEFLLSDNSIYGEIPSYVGNFSRLKQLELDNNKFSGNIPPVMGQLKELTLFYAWQNQLNGSIPTEISNCDKLEALDLSHNFLTGSIPSALFHLRNLTQLLLISNRLSGQIPADIGSCTSLIRLRLGSNNFTGQIPPEIGHLRSLSFLELSNNQLSGDIPSEIGNCAHLELLDLHSNVLEGTIPSSLKFLVGLNVLDLSANRLTGSIPENLGKLKSLNKLILSGNIISGVIPGTLGQCKDLQLLDISNNRITGSIPHEIGHLQGLDILLNLSWNSLSGPIPQTFSNLSKLSILDLSHNKLTGTLTVLVSLDNLVSLNVSYNSFSGSLPDTKFFRDLPSAAFAGNPDLCISKCHTSENGQGFNKSIRNVIVYTFLGVVLTSIFVTCGVILALRIHGGNFGRNFDSNEMEWAFTPFQKVNFSIDDILTKLSESNIVGKGCSGIVYRVETPTKQIIAVKKLWPIKKEEPPERDLFTAEVQTLGSIRHKNIVRLLGCCDNGRTRLLLFDYICNGSLFGLLHEKRLFLDWDARYKIILGTAHGLEYLHHDCIPPIVHRDIKANNILVGPQYEAFLADFGLAKLVNSSECSGASHTVAGSYGYIAPEYGYSLRITEKSDVYSFGVVLLEVLTGMEPTDNSIPEGAHIVTWVSNEIREKRREFTSILDQQLVLQSGTKTSEMLQVLGVALLCVNPSPEERPTMKDVTAMLKEIRLESDDFEKSNFLHKGMVVNPKAAVHCSSFSRSCEPLIIESTSSSSS 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01429 1088 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 842 1056 - -
Vian4g01429 1088 ProSiteProfiles Leucine-rich repeat profile. 624 646 IPR001611 GO:0005515
Vian4g01429 1088 ProSitePatterns Serine/Threonine protein kinases active-site signature. 885 897 IPR008271 GO:0004672|GO:0006468
Vian4g01429 1088 Pfam Leucine rich repeat N-terminal domain 25 66 IPR013210 -
Vian4g01429 1088 SUPERFAMILY Protein kinase-like (PK-like) 759 1055 IPR011009 -
Vian4g01429 1088 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 739 841 - -
Vian4g01429 1088 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 407 691 - -
Vian4g01429 1088 Gene3D Transferase(Phosphotransferase) domain 1 842 1060 - -
Vian4g01429 1088 SUPERFAMILY RNI-like 267 650 - -
Vian4g01429 1088 Pfam Protein kinase domain 765 1035 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01429 1088 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 24 199 - -
Vian4g01429 1088 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 200 325 - -
Vian4g01429 1088 SUPERFAMILY L domain-like 28 296 - -
Vian4g01429 1088 Gene3D Ribonuclease Inhibitor 222 403 IPR032675 -
Vian4g01429 1088 Gene3D Ribonuclease Inhibitor 404 693 IPR032675 -
Vian4g01429 1088 Gene3D Ribonuclease Inhibitor 23 221 IPR032675 -
Vian4g01429 1088 ProSiteProfiles Leucine-rich repeat profile. 407 429 IPR001611 GO:0005515
Vian4g01429 1088 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 548 1033 - -
Vian4g01429 1088 Gene3D Phosphorylase Kinase; domain 1 735 841 - -
Vian4g01429 1088 PRINTS Leucine-rich repeat signature 528 541 - -
Vian4g01429 1088 PRINTS Leucine-rich repeat signature 622 635 - -
Vian4g01429 1088 Pfam Leucine rich repeat 551 611 IPR001611 GO:0005515
Vian4g01429 1088 Pfam Leucine rich repeat 94 153 IPR001611 GO:0005515
Vian4g01429 1088 SMART LRR_typ_2 622 641 IPR003591 -
Vian4g01429 1088 SMART LRR_typ_2 645 678 IPR003591 -
Vian4g01429 1088 SMART LRR_typ_2 477 501 IPR003591 -
Vian4g01429 1088 SMART LRR_typ_2 285 309 IPR003591 -
Vian4g01429 1088 SMART LRR_typ_2 357 381 IPR003591 -
Vian4g01429 1088 SMART LRR_typ_2 140 164 IPR003591 -
Vian4g01429 1088 SMART LRR_typ_2 429 453 IPR003591 -
Vian4g01429 1088 SMART LRR_typ_2 525 549 IPR003591 -
Vian4g01429 1088 SMART LRR_typ_2 116 139 IPR003591 -
Vian4g01429 1088 Pfam Leucine Rich Repeat 407 428 IPR001611 GO:0005515
Vian4g01429 1088 ProSitePatterns Protein kinases ATP-binding region signature. 769 797 IPR017441 GO:0005524
Vian4g01429 1088 ProSiteProfiles Protein kinase domain profile. 763 1043 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01429 1088 SMART serkin_6 763 1038 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01429 Vian-Chr4 28795357 28798997 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01429 23 1076 Receptor kinase-like Gene Family AT5G56040 46.956 0.0 924
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vian4g01429 Pkinase 9.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01429 - - gmx:100807225 1922.9