Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01411 ATGGACAACATGGACAACATGGGAGACCCAAAGAGCATCATACAAGAACTGCTACAAGGTTTGGAGTTGGCAAGGCAGCTAGAAGTGCATCTTCACACGCCTTCTTCGTCCCGCGAAACCCGTGACCTCCTCATCCACAACATCATATCCATCTTTGAAAAGGCACTTGAAATGGTAAATTGGAAAGGTCCGGTGCCTGTCGGTGAGTCATCACAACTGCCCCTGGCAGCCGCAATCCGAATGTCAGACTCACCTATCAGCAGTAGTCCCCAAAGTGAAGACTCTGAGAGAGATTTGAAGGACCAAGACAACAATGCTTTCAAGAAAAGAAACACTTTGCCCAGATGGACAAAAAGGATTCGGGTTACACCGGGAATGGGGGTGGAAGGGCCTCTTGACGATGGACATAGTTGGAGAAAGTATGGTCAGAAAGACATCCTTGGAGCCATGTACCCCAGATCTGATGAGGACCCTACAATTTTTGAAATCAATTATCGAGGAAATCACACATGCACGGTGGCCCACAGCGCGGGTACTTCTTCAATAATTCCACTAGAAAACCAAGAACCAACTCTGAACAACACAAATCAGCAGCAGAATATCTTGCAGAGCCTTGAGCAGCAACCAAATGATTTACTTTTGAGTCTCCGAGAAGGGTTGAGAGTCCAAACACAAAACCTTGATTCCACTGACCAATCATTTTCTCCATTCCGTTTCCCTTTATCAACAAACATGGAAAACGAAGGTCAGGTTTTCCCTCCTCATGTTCTTGAAAATTTCACTTCTCCTTATATGTCACCTGCTACATCCGGAATCAGCCACTTTTCGGTGTCTCCAACTGGGGTGAACAATTTTGGAGGGAACCAAAATTTGTCAACTTTTGAGTCTCATATCAATGACATGATCCCTGCTGTTACTTCTGCTCCAAACTCAGCAGCTGTTGCTTTAGAGTTTCCTTTCGACCAGTTTGGATTTGATGGTCAGAACCTCAGATTCGGTAACCCATGA 1008 0.4544 MDNMDNMGDPKSIIQELLQGLELARQLEVHLHTPSSSRETRDLLIHNIISIFEKALEMVNWKGPVPVGESSQLPLAAAIRMSDSPISSSPQSEDSERDLKDQDNNAFKKRNTLPRWTKRIRVTPGMGVEGPLDDGHSWRKYGQKDILGAMYPRSDEDPTIFEINYRGNHTCTVAHSAGTSSIIPLENQEPTLNNTNQQQNILQSLEQQPNDLLLSLREGLRVQTQNLDSTDQSFSPFRFPLSTNMENEGQVFPPHVLENFTSPYMSPATSGISHFSVSPTGVNNFGGNQNLSTFESHINDMIPAVTSAPNSAAVALEFPFDQFGFDGQNLRFGNP 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01411 335 ProSiteProfiles WRKY domain profile. 127 154 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian4g01411 335 MobiDBLite consensus disorder prediction 93 108 - -
Vian4g01411 335 Pfam WRKY DNA -binding domain 133 154 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian4g01411 335 Gene3D WRKY domain 117 181 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian4g01411 335 SMART WRKY_cls 132 173 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian4g01411 335 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 6 154 IPR044810 GO:0003700
Vian4g01411 335 SUPERFAMILY WRKY DNA-binding domain 131 172 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian4g01411 335 MobiDBLite consensus disorder prediction 82 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01411 Vian-Chr4 28556142 28557410 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01411 11 251 WRKY Transcription Factor Family AT4G23810 32.180 1.10e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vian4g01411 WRKY 1.6e-06 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01411 - - gmx:100776906 460.685