Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01402 ATGGGATTTCAAACATCACAATCACATAGTACTAAATGGATACCACAACCAATTTTCAAAGCAAAGGACGTCCCAATTGATGTTCATGAAAATTCATTAATTCAAAGGACCACACTGAATTTGATTGATCATTCCCAAGCCAATTCCAACTACATTTTGTCTGGTTATGATTCATGGATGGTAAGACATCCTTCAGCATTGAACTCATTTGAAAGGTTGATGAAAAATGCCACAGGGAAAAGGATCATCCTTTTTCTGGATTACGACGGTACCTTATCCCCAATTGTAAATGATCCAGATCGTGCTTTCATGTCTGAAGAGATGCGTGCTACAGTACATGAAGTTGCTTCTTATTTTCCAACAGCAATAATTAGTGGAAGAAGTAGAGATAAGGTACAAGATTTCGTGAAGTTGAATAATTTGTATTATGCTGGGAGCCATGGGATGGACATAATGGCACCATCAATGCCAATTACATCCTCTGCAGGGGAACATATTGAAATTGCCATTAACAAGAGCTGCACTGAAGTTCCTTTTCAACCTGCCAAAAAGTATTTGCCAGCAATTCGAGAGATATTAAGAATACTAAGGGATGAAGTAGAGGAAATAAAAGGAGCAATGGTTGAGGACAACGGATTCTGCGTCTCTGTACACTTCCGGCAGGTCCAAGAAAAGGATTATGGTCTGTTGGAAGAGAAAGTGAAGTCTGTGCTTGAAAAGCATCCACAATTTTGCTTGACAGAGGGTAAAAAGGTTATGGAAATAAGGCCTTCTATAAAGTGGAACAAAGGAAATGCTGTAGAATATTTTCTTGCCACATTAGGATTAAGCAGTTGCAATGATATCCTTCCTGTGTATATTGGCGATGACAGAACTGATGAAGATGCTTTTAAGGTCATACAGAGTAGAGAGCAAGGTTATCCAATCATAGTGTCTTCAGTTCCAAGAGAAACTAAGGCTTTGTACTCTTTGCGTGACCCGTCGGAAGTACTAATCTTTTTGTCACGTTTGGCAAAATGGAGGAAAACCGCTTACTAA 1038 0.3902 MGFQTSQSHSTKWIPQPIFKAKDVPIDVHENSLIQRTTLNLIDHSQANSNYILSGYDSWMVRHPSALNSFERLMKNATGKRIILFLDYDGTLSPIVNDPDRAFMSEEMRATVHEVASYFPTAIISGRSRDKVQDFVKLNNLYYAGSHGMDIMAPSMPITSSAGEHIEIAINKSCTEVPFQPAKKYLPAIREILRILRDEVEEIKGAMVEDNGFCVSVHFRQVQEKDYGLLEEKVKSVLEKHPQFCLTEGKKVMEIRPSIKWNKGNAVEYFLATLGLSSCNDILPVYIGDDRTDEDAFKVIQSREQGYPIIVSSVPRETKALYSLRDPSEVLIFLSRLAKWRKTAY 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01402 345 Gene3D - 84 324 IPR023214 -
Vian4g01402 345 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 51 343 IPR044651 GO:0004805|GO:0005992
Vian4g01402 345 SUPERFAMILY HAD-like 83 342 IPR036412 -
Vian4g01402 345 Gene3D - 163 258 - -
Vian4g01402 345 CDD HAD_TPP 84 330 - -
Vian4g01402 345 FunFam Trehalose 6-phosphate phosphatase 182 258 - -
Vian4g01402 345 FunFam Trehalose 6-phosphate phosphatase 187 345 - -
Vian4g01402 345 Pfam Trehalose-phosphatase 85 328 IPR003337 GO:0003824|GO:0005992
Vian4g01402 345 FunFam Trehalose 6-phosphate phosphatase 82 168 - -
Vian4g01402 345 NCBIfam HAD-IIB family hydrolase 83 300 IPR006379 -
Vian4g01402 345 NCBIfam trehalose-phosphatase 80 339 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01402 Vian-Chr4 28417228 28419454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01402 80 338 Trehalose Biosynthesis Gene Families AT1G70290 27.273 4.37e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01402 K01087 - gmx:100819120 588.186