Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01398 ATGAATTTTCAGCAAGACAAATTTGTTAGATTTCGTGATTGGAATTCAGAGAAGGATTCTGAGAGCAGCTCTCCTGCAATTCATGTAGAACGCCCAGGGGGAGTCAAGAATACACTAAATTCAGTTTCTGAGAAGTTTCAAAGGGGTTTGGAATCCAGTTCAGAGGGGATGAAGAGATTTAGAAAATCATTCAAATCTCTTCCCTATAACAGAGTTCTCTCTGGAAGTTTTAGTTCTGGAAAGAAAATTCTTGATCCCCAGGGTCCTTTCCTTCAAAAGTGGAATAAGATATTTGTATTATCATGTCTTATTGCTGTGTCACTTGATCCTTTGTTCTTCTATGTTCCGGTGATCGATGATAACAATAAATGTCTTTCTCTGGACAGAAAAATGGAAATTACAGCAACTGTTTTAAGATCTTTCTCTGATATTTTTTATATAATCCATATAATTTTCCAATTTCGTACCGGATTCATTGCTCCCTCTTCTCGAGTATTTGGAAGAGGTGTTTTGGTTGAAGATACTTGGGTAATAGCAATGCGGTATCTATCATCATACTTCTTAATTGACATTCTTGCCGTTCTTCCCCTCCCGCAGGTGGCAATTCTAATTATCATTCCCAAGTTGAGGGGCTCTGAATCACTGAATACAAAGACCTTGCTGAAATTTATTGTCTTCTTCCAGTACATCCCACGATTTTTGCGATTAATTCCATTATATAAAGAAGTTACTAGGACCTCTGGCATCCTCACTGAAACAGCTTGGGCTGGAGCTGCATTCAATCTCTTTCTGTACATGCTAGCAAGTCATGTTATTGGTGCCTTTTGGTACTTGTTTTCTATAGAAAGAGAAACCACATGCTGGCAAGATGCGTGTCGAGGAAATAGCACATGTAACACAGAAGCTATGTATTGTGATAATCATCAAGTTTTGGGCTCTATTTCAGTATTCCTGAATGCTTCTTGCCCAATACTGGACCAAAATACAACACTCTTTAATTTTGGAATATTTCTTGATGCCCTTCAATCTGGAGTTGTGGAGTCAAGAGATTTCCCACAGAAGTTCTTTTATTGTTTTTGGTGGGGCCTACGAAATTTGAGTTCTCTTGGTCAGAACCTTGCAACAAGTACCTATGTTTGGGAAATCTGCTTTGCAATTTTCATTTCAATTGCTGGTTTGGTATTATTTGCATTCCTCATTGGAAATATGCAGACATATTTGCAGTCAACGACTACCAGATTGGAGGAAATGAGAGTAAAAAGGAGAGATGCTGAGCAGTGGATGTCTCATCGATTACTCCCTGACAGCCTGAGAGAAAGAATCAGACGACATGAGCAGTACAAATGGCAAGAAACCAGAGGTGTTGATGAAGACAACTTGATCCGAGATCTTCCAAAGGATTTGAGAAGGGATATTAAGCGTCATCTTTGCTTGGCTTTGCTGATGAGGGTGCCAATGTTTGAGAAAATGGATGAGCAACTTCTGGATGCAATGTGTGACAAACTCCAGCCAGTGCTATACACAGAAGAAAGCTGCATTGTCCGGGAAGGAGATCCTGTTGATGAGATGCTCTTCATAATGCGCGGCAAGCTATTGACTGTAACCACTAATGGTGGAAGAACAGGCTTCTTTAACTCTGAATACCTCAAAGCTGGTGACTTTTGTGGAGAGGAACTTCTCACATGGGCTTTAGATCCTCACTCCTCATCCAACCTTCCTATATCAACTAGGACTGTCCAAACTCTTTCAGAAGTGGAAGCATTTGCTCTAAAAGCGGATGACTTGAAGTTTGTTGCTTCACAGTTCCGGCGCCTTCATAGTAAGCAGCTTCGTCACACTTTCAGGTTTTATTCACAACAATGGCGTACATGGGCTGCATGTTTCATACAAGCAGCGTGGAGGCGTTATAGTAAAAAGAAGCTGGAAGAGTCTCTGAGGGAAGAAGAGAATCGTTTGCAAGATGCATTAGCCAAAGCAGGTGGTAGCTCACCTAGTCTAGGTGCCACAATATATGCTTCAAGGTTTGCAGCTAATGCACTCAGACTTTTACGTAGAAATAGCACAAGAAAGACCAGGCTGCCCGAAAGAATATCACCCATGCTGCTGCAGAAGCCTGCTGAGCCTGATTTTACTTCCGAAGAACAATAG 2148 0.4101 MNFQQDKFVRFRDWNSEKDSESSSPAIHVERPGGVKNTLNSVSEKFQRGLESSSEGMKRFRKSFKSLPYNRVLSGSFSSGKKILDPQGPFLQKWNKIFVLSCLIAVSLDPLFFYVPVIDDNNKCLSLDRKMEITATVLRSFSDIFYIIHIIFQFRTGFIAPSSRVFGRGVLVEDTWVIAMRYLSSYFLIDILAVLPLPQVAILIIIPKLRGSESLNTKTLLKFIVFFQYIPRFLRLIPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVIGAFWYLFSIERETTCWQDACRGNSTCNTEAMYCDNHQVLGSISVFLNASCPILDQNTTLFNFGIFLDALQSGVVESRDFPQKFFYCFWWGLRNLSSLGQNLATSTYVWEICFAIFISIAGLVLFAFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPDSLRERIRRHEQYKWQETRGVDEDNLIRDLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDAMCDKLQPVLYTEESCIVREGDPVDEMLFIMRGKLLTVTTNGGRTGFFNSEYLKAGDFCGEELLTWALDPHSSSNLPISTRTVQTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYSKKKLEESLREEENRLQDALAKAGGSSPSLGATIYASRFAANALRLLRRNSTRKTRLPERISPMLLQKPAEPDFTSEEQ 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01398 715 FunFam Cyclic nucleotide-gated ion channel 1 413 477 - -
Vian4g01398 715 SUPERFAMILY Voltage-gated potassium channels 85 408 - -
Vian4g01398 715 Gene3D Jelly Rolls 484 604 IPR014710 -
Vian4g01398 715 Pfam Cyclic nucleotide-binding domain 507 597 IPR000595 -
Vian4g01398 715 ProSiteProfiles cAMP/cGMP binding motif profile. 486 570 IPR000595 -
Vian4g01398 715 SMART cnmp_10 486 617 IPR000595 -
Vian4g01398 715 Coils Coil 638 658 - -
Vian4g01398 715 SUPERFAMILY cAMP-binding domain-like 415 608 IPR018490 -
Vian4g01398 715 CDD CAP_ED 486 617 IPR000595 -
Vian4g01398 715 Gene3D Helix hairpin bin 412 477 - -
Vian4g01398 715 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 62 710 - -
Vian4g01398 715 MobiDBLite consensus disorder prediction 14 34 - -
Vian4g01398 715 FunFam Cyclic nucleotide-gated ion channel 1 484 602 - -
Vian4g01398 715 Pfam Ion transport protein 94 413 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vian4g01398 715 Gene3D - 97 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01398 Vian-Chr4 28304178 28320980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01398 1 714 Ion Channels AT5G53130 79.387 0.0 1155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01398 K05391 - gmx:100815774 1346.64