Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01388 ATGAAAATCCCGAATCCCATACTCTCGCTCTTCATCCTCTTGAACCCTTCCCTAGTACTGGCAAACATAGAGACATGTTCAGACAGCGTTTGCCAGGGTGGTGAGCCAGTAATCCGATTTCCCTTCCGCATAGAAGGAAATCTCGCAGAACCATGCGGATACCCAGGCTTCATAGTCTCCTGCAACCAGAACGCCCAAACACTCCTCAACCTACCAAATTGGGGCCCACTCAAAATCCAAACTATAAACTACGCCGCACAGCAACTGTGGGTCAACGATCCCGACAACTGCCTCCCCAAACGTCTTCTCTCTCTCAATCTCTCCACCTCTCCCTTCCGTGCCGTTTACCACCAGCAGTTTACCTTCTTCAACTGCTCCGTCAATTTGGCGAACCTCGTTCGTCGATACCGTCCTATAGGTTGTCTGAGCGATTCTCCCAAGTACGCCGTTTTCGCCACGCCTTCTACGACTGTGGTTGGCCACTTGTCTTCCGTGTGTGATTTCGTGGCCACGGTGAAGGTGCCTGTGCAGTCACCGTTTTACGATCAAGTCACATCGTCGGAACTCGGCGAGGATCTGCGTCTCTCGTGGGATTCGCCGGCGTGCGGTAGGTGTGAGTCCCACGGTGGCCGGTGCGGCTTTAAGAGTGACGAGACTTTTGAGCTTGACTGTTATGGTTTCCCTTCGAAAGGAATTTCCCGTGGTGCCCGTTACGCCATAGCCATATGCATAGGGGTACCAGCTATGTTATGTTCCTTTGGAGTATTGAGTTGCATCTGCAGCTGGCTCAAAATGAGGAACCATGATGGACCTTGGACTCACGAAACTGTGGCAGATTTTGAGGCTCTAGTAGGCTCAAGGCCCACATCATCAGTATCGGGCCTGGACAGACCCACAATCGAATCGTACCCAAAAATAGTTATTGGTGAGAACAGACTGTTACCGAAGAAGGGGGAAAAAATGTGCTCAATATGTTTGTCAGAGTACATGCCAAAAGAGACAGTGAAAAGCATACCTGAATGTGGACACTGCTTTCATGCACAATGCATCGATGAATGGCTTCCACTGAACGCCTCCTGCCCAATCTGCCGAACTTCTCCCCGAAAGTTTCCACAACCTCGTGCTCGATCATCAACATAA 1140 0.5061 MKIPNPILSLFILLNPSLVLANIETCSDSVCQGGEPVIRFPFRIEGNLAEPCGYPGFIVSCNQNAQTLLNLPNWGPLKIQTINYAAQQLWVNDPDNCLPKRLLSLNLSTSPFRAVYHQQFTFFNCSVNLANLVRRYRPIGCLSDSPKYAVFATPSTTVVGHLSSVCDFVATVKVPVQSPFYDQVTSSELGEDLRLSWDSPACGRCESHGGRCGFKSDETFELDCYGFPSKGISRGARYAIAICIGVPAMLCSFGVLSCICSWLKMRNHDGPWTHETVADFEALVGSRPTSSVSGLDRPTIESYPKIVIGENRLLPKKGEKMCSICLSEYMPKETVKSIPECGHCFHAQCIDEWLPLNASCPICRTSPRKFPQPRARSST 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01388 379 Pfam Wall-associated receptor kinase galacturonan-binding 26 93 IPR025287 GO:0030247
Vian4g01388 379 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 10 367 IPR046948 -
Vian4g01388 379 Pfam Wall-associated receptor kinase C-terminal 162 225 IPR032872 -
Vian4g01388 379 Pfam Ring finger domain 320 364 IPR001841 -
Vian4g01388 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 368 IPR013083 -
Vian4g01388 379 CDD RING-H2_EL5-like 322 364 - -
Vian4g01388 379 SUPERFAMILY RING/U-box 304 368 - -
Vian4g01388 379 ProSiteProfiles Zinc finger RING-type profile. 322 364 IPR001841 -
Vian4g01388 379 SMART ring_2 322 363 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01388 Vian-Chr4 28191928 28198035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01388 24 367 C3H Transcription Factor Family AT2G46495 35.613 4.15e-66 211
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01388 4 28191928 28198035 Vian4g01388 4 28191928 28198035 ECH