Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01386 ATGTCGTCGACGGTGCTGGAAGTGACGCGGGCGGCACACGAGGAGGTTGAACGGTTGGAGCGGCTGATAGTGAAGGAGCTCCAGAATGAGCCCGGTACCAACAAGGAGCGTTTGTATCAGAGTCACCGTGTGCGGAACATGATCGATACCATTACCTCCACCACTGAAAAGCTTGTGCGTTTTCTTGTTATTAGGTTTTTCCTTCTTTTTCCATTCTCACATCGTGACCTAGCTTGCTTTTCTACGTTTCAGATTGGAATATATGAAGATAACGACAATGCGAGGAAGGACGAGATTGCTGCACTCGGAGGCCAAACCGCCTCTGGAATTAACGTTTTCAGCGCCTTTTATGATAGACTCAAGGAGGAAGCTCTTGGTCGATACTTAGACCTGCATGAATTATATTATCAGTATGTCAATTCTAAGTTTGGAGATCCACTTGAGTATTCTGCATATCTTGATGTTTTCTCAGACACAAATAAGATTCCCCGCAAGATGAAAGTGACCAGTCATCTTCAGCAATTCCTACTTCATGTTTCAATTCTGTTCCTTTATTTCTTGGCTGGAGTAATATTGAATGACATATTGCATAGTGAAAAGGCTCTGGCTGCATTAGGGCTTAAGACTGGCGGTACTATTCAACAACGGGCTGAGAGGCTCTTCCTCACCAAGCACACACCTCTTGAAAAGTTGGAGAGGAAGCATTTTGCTAAGGGGACACGTAGTGTAGAGAAGAACAGGGTTGCTCCAGTTCCACAAGAAGATGGAAATTCTAAAGAAATTGCATTGATGGAAGCTAAAATGGAAAAACTGTGTGATTTGTTAGAGGAGACAATTGCTCGAACAAAAGATAATGTTGTAAAGAAACAGGCCCTAACATATGAAGAAATGGAAGCAGAACGTGAGGAGGAAGAGACACAAGAGGACACTGAAAGCGAAGATGACGAGCAGCAGATATATAATCCCCTAAAACTACCGATGGGGTGGGATGGAAAACCTATACCTTATTGGCTATATAAGCTACATGGTCTGGGTCAGGAATTTAAGTGTGAGATATGTGGAAACTACAGTTATTGGGGGCGTCGGGCTTTTGAACGACATTTTAAAGAATGGCGCCATCAACATGGGATGCGGTGTCTTGGTATACCGAATACCAAGAATTTCAACGAGATCACATCAATTGAGGAAGCAAAGGAACTTTGGAAGAAGATACAGCAAAGACAAGGAGTGAACAAGTGGCGCCCAGATCTAGAGGAAGAGTATGAAGACAAAGAAGGCAACATCTATAATAAGAAAACATACACTGACTTACAGCGCCAGGGACTGATTTGA 1332 0.4339 MSSTVLEVTRAAHEEVERLERLIVKELQNEPGTNKERLYQSHRVRNMIDTITSTTEKLVRFLVIRFFLLFPFSHRDLACFSTFQIGIYEDNDNARKDEIAALGGQTASGINVFSAFYDRLKEEALGRYLDLHELYYQYVNSKFGDPLEYSAYLDVFSDTNKIPRKMKVTSHLQQFLLHVSILFLYFLAGVILNDILHSEKALAALGLKTGGTIQQRAERLFLTKHTPLEKLERKHFAKGTRSVEKNRVAPVPQEDGNSKEIALMEAKMEKLCDLLEETIARTKDNVVKKQALTYEEMEAEREEEETQEDTESEDDEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKKIQQRQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01386 443 MobiDBLite consensus disorder prediction 297 316 - -
Vian4g01386 443 Coils Coil 287 314 - -
Vian4g01386 443 Pfam SF3a60/Prp9 C-terminal 324 443 IPR024598 GO:0000398|GO:0003723|GO:0005681
Vian4g01386 443 Pfam Replication stress response SDE2 C-terminal 200 238 IPR025086 -
Vian4g01386 443 Coils Coil 265 285 - -
Vian4g01386 443 PANTHER SPLICING FACTOR SF3A-RELATED 3 160 - -
Vian4g01386 443 MobiDBLite consensus disorder prediction 295 316 - -
Vian4g01386 443 ProSiteProfiles Zinc finger matrin-type profile. 348 379 IPR000690 GO:0003676|GO:0005634|GO:0008270
Vian4g01386 443 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 121 167 IPR031774 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01386 1 443 C2H2 Transcription Factor Family AT5G06160 56.415 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01386 K12827 - fve:101302395 587.03