Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01383 ATGATTATCAAGAGGAACTTGAAATCCCAAATGCCGAATCTGAAACGGGTCAAACTAGGTGACTCGGTGGGCGAGGACGACGATTGTTCATACGCTCGAAAGAAGAGAAAGACCAACGGTTACTACCCTTTGAACCTTCTTGGCGACGTGATTCCAGTGAGTTTTCACGGACTGTTAGGCGCCAGCGTGTCGGAGAAAGGGTTCTCTGCAACGTGGTGCACGCCGGTGTCATGCAACGGAGTGGAATCGAATACGGCACACAACGTCGTTGAGGCGAAGAAGAAGAGTGAGGTTCAGCGGCCACCTCTAGTTAGGACTTCAAGGGGGCGAGTTCAAGTTCTGCCTTCGCGGTTCAACGACTCTGTTATTGATAATTGGAGGAAAGAGAGCAAAAGTAGTAGTGGCTTGCGTGATGGTGATTATGATGATGAGTTTGAATGCAAGAAGGAGAAGCTCAGCTTCAGGGCACCCAAGGTTTGTAGTAATCAGAAGAAGGGAAAAAACGAGGAGAAAACGGGTACCAAGGGTCGTAAGTACTCGGCATTGTGCAAGAGTTATGAGAGGAGCAAGTGTTCCAGTTTGCCTGGTGGTGGATCATTGGCCTTGAGGCATGGTGGGCTGGTGGTTGAAGAAGACGAGAAGGGAAGGTTTTTGGAGGTGGAAGGAGTTGGTTTGATGGGCTTGAAGGAGAATAGTGGGGAGAGGAGAAATGGGTTGTTTGGGCCAGAAGATTTTTATGCAGGTGACATAGTGTGGGCCAAAGCTGGGAGAAAGGAACCTTTTTGGCCTGCTATTGTTATTGATCCTATGACTCAGGCTCCCGAGTTGGTTCTCAGGTCTTGTATAGCTGATGCAGCTTGTGTCATGTTTCTTGGGTATGCGGGCAATGAGAATCAAAGGGACTATGCATGGGTGAAGCATGGGATGATTTTTCCATTTGTGGATTATGTGGACAGGTTTCAGGGGCAGTCTGAGTTGAGTTTCTATAATCCCTCTGACTTCCAAATGGCAATAGAGGAGGCATTTTTGGCGGAGAGGGGTTTCACAGAGAAGTTGATAGCAGATATAAATACAGCAGCTACTAGCAATGGTTATGATGATTCCATTTTGAAAGCCTTTCAGGAGGTCACTCGTTCAAACCATTATGCAGGTTATCGTTTTCTGAACCAGGATTTATTTGATAAGAAAGAGACGCGGCCCTGTGAAGCTTGTGGGTTTCCTTACAAGATGTTAAAAAAGACAAGGGATTCAAGGTCTGGGGGCCCATTCCTATGCAGAACATGTGCCAGGTTAACAAAATCAAAGCATTATTGTGGCATATGCAAGAAAGTTTGGAATCATTCAGATAGTGGAAGTTGGGTGCGCTGTGATGGATGCAAAGTGTGGGTGCATGCAGAATGTGACAAAATTTCTAGCAACCTTTTCAAGAATCTTGAAGGCACTGATTATTATTGCCCTACTTGCAAAGCCAAGTTTGATTTTGAGTTATCTGATTCAGAAAAACCACATGCAAAAGTCAAGTGGAACAAAAACAATGGGCAGCTAGTGCTTCCAAATAGGGTCACTGTTCTCTGCAATGGTGTGGAAGGTGTATATTTTCCAAGCCTTCATTCAGTTGTGTGCAAGTGTGGGTTTTGTGGGGCAGAAAAGCAAGCACTCAGTGAATGGGAACGACATACAGGTTCCAAGTCAAGAAATTGGAGAACAAGCATTAGGGTGAAAGACTCCATGCTACCTTTGGAACAATGGATGCTGCAGTTGGCAGAATTTCATGCTATTGCTCAAGTTCCTGCCAAACCCAAGAAACCTTCTTTAAAAGAAAGAAAGCAGAAGCTGCTTACCTTCTTGCAAGAGAAGTATGAACCTGTTTATGCTAAGTGGACTACAGAACGCTGTGCTGTTTGTAGATGGGTTGAAGACTGGGACTATAACAAAATTATCATTTGCATCAGATGTCAAATAGCTGTTCATCAAGAATGCTATGGAGCAAGAAATGTTCGAGATTTTACTTCTTGGGTTTGTAAGGCTTGCGAAACGCCTCACATCAAGCGGGAGTGTTGTCTTTGTCCCGTAAAAGGTGGTGCTCTGAAGCCAACTGATGTTGACACGCTATGGGTTCATGTAACTTGTGCTTGGTTTCGACCTGAAGTCTCTTTTGCTAGTGATGAGAAGATGGAGCCTGCTTTGGGTATTCTAAGTATTCCATCAAATTCTTTTGTGAAGATTTGTGTTATTTGCAAGCAAATTCATGGTTCGTGTACACAATGTTGCAAGTGTTCTACTTATTTCCATGCCATGTGTGCATCGAGGGCCGGTTACCGAATGGAGTTGCATTGTTTAGAGAAAAATGGCAGGCAGACAACAAAAATGGTCTCTTATTGTGCTTACCACAGGGCTCCCAATCCAGATACTGTTTTGATTATGCAAACCCCGCTTGGGGTGATTTCAACCAAAAGCCTTCTCCAAACTAAGAAAAAAACTGGTTCAAGGTTAATCTCGTCTAACAGAAGAAAGCAAGATGTCACCCCTATTGATAACACCGAGCATGAGCCATTTTCTGCTGCTAGGTGCCGTATCTTTCAAAGAACAAATCATACCAAAAAGAGAGCTGCGGATGAGGCTGTTTCTCATCAAGTGAGGGGTCACTATCACCATCCTTTAGATGCAATACAGAGTTTAAATGCGCCCAGAGTGGTGCTTGAGCCCCAGGCATTTTCTTCATTCAGAGACCGCCTTTACTACTTGCAGAGAACCGAAAATGAACGGGTTTGCTTTGGTAGATCGGGCATACATGGATGGGGCCTCTTCGCACGTAGAAATATTCAAGAAGGAGAAATGGTACTTGAGTATCGTGGCGAACAAGTGAGGCGCAGCATTGCAGATTTGAGGGAGGCACGCTATAGATTAGAAGGCAAAGATTGTTATCTGTTTAAGATAAGTGAAGAAGTGGTAGTAGATGCCACTGACAAAGGGAATATAGCACGGCTGATTAATCATTCTTGTATGCCAAATTGCTATGCAAGAATCATGAGTGTCGGTGACGATGAGAGCCGGATTGTTCTCATTGCCAAGACTATCGTGTTGGCCGGCGATGAGTTAACGTATGACTACCTGTTTGATCCTGATGAGCCAGATGAATTCAAAGTCCCCTGCCTATGTAAAGCTCCAAACTGCCGGAAATTCATGAATTAA 3192 0.4452 MIIKRNLKSQMPNLKRVKLGDSVGEDDDCSYARKKRKTNGYYPLNLLGDVIPVSFHGLLGASVSEKGFSATWCTPVSCNGVESNTAHNVVEAKKKSEVQRPPLVRTSRGRVQVLPSRFNDSVIDNWRKESKSSSGLRDGDYDDEFECKKEKLSFRAPKVCSNQKKGKNEEKTGTKGRKYSALCKSYERSKCSSLPGGGSLALRHGGLVVEEDEKGRFLEVEGVGLMGLKENSGERRNGLFGPEDFYAGDIVWAKAGRKEPFWPAIVIDPMTQAPELVLRSCIADAACVMFLGYAGNENQRDYAWVKHGMIFPFVDYVDRFQGQSELSFYNPSDFQMAIEEAFLAERGFTEKLIADINTAATSNGYDDSILKAFQEVTRSNHYAGYRFLNQDLFDKKETRPCEACGFPYKMLKKTRDSRSGGPFLCRTCARLTKSKHYCGICKKVWNHSDSGSWVRCDGCKVWVHAECDKISSNLFKNLEGTDYYCPTCKAKFDFELSDSEKPHAKVKWNKNNGQLVLPNRVTVLCNGVEGVYFPSLHSVVCKCGFCGAEKQALSEWERHTGSKSRNWRTSIRVKDSMLPLEQWMLQLAEFHAIAQVPAKPKKPSLKERKQKLLTFLQEKYEPVYAKWTTERCAVCRWVEDWDYNKIIICIRCQIAVHQECYGARNVRDFTSWVCKACETPHIKRECCLCPVKGGALKPTDVDTLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCLEKNGRQTTKMVSYCAYHRAPNPDTVLIMQTPLGVISTKSLLQTKKKTGSRLISSNRRKQDVTPIDNTEHEPFSAARCRIFQRTNHTKKRAADEAVSHQVRGHYHHPLDAIQSLNAPRVVLEPQAFSSFRDRLYYLQRTENERVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADLREARYRLEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIVLIAKTIVLAGDELTYDYLFDPDEPDEFKVPCLCKAPNCRKFMN 1063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01383 1063 SMART PHD_3 631 678 IPR001965 -
Vian4g01383 1063 SMART PHD_3 437 489 IPR001965 -
Vian4g01383 1063 SMART PHD_3 742 798 IPR001965 -
Vian4g01383 1063 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 681 800 IPR013083 -
Vian4g01383 1063 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1063 IPR025780 -
Vian4g01383 1063 Pfam SET domain 932 1037 IPR001214 GO:0005515
Vian4g01383 1063 Pfam PHD-zinc-finger like domain 685 797 - -
Vian4g01383 1063 CDD PHD_TCF19_like 438 488 - -
Vian4g01383 1063 MobiDBLite consensus disorder prediction 826 840 - -
Vian4g01383 1063 ProSiteProfiles Zinc finger PHD-type profile. 435 491 IPR019787 -
Vian4g01383 1063 Pfam PHD-finger 644 678 - -
Vian4g01383 1063 SUPERFAMILY Tudor/PWWP/MBT 240 349 - -
Vian4g01383 1063 PANTHER PHD FINGER PROTEINS 92 509 - -
Vian4g01383 1063 Gene3D SET domain 819 1063 IPR046341 -
Vian4g01383 1063 SUPERFAMILY FYVE/PHD zinc finger 435 492 IPR011011 -
Vian4g01383 1063 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 431 493 IPR013083 -
Vian4g01383 1063 CDD SET_SETD1-like 908 1059 - -
Vian4g01383 1063 SUPERFAMILY SET domain 911 1063 IPR046341 -
Vian4g01383 1063 CDD PWWP_AtATX3-like 246 350 - -
Vian4g01383 1063 ProSiteProfiles SET domain profile. 921 1038 IPR001214 GO:0005515
Vian4g01383 1063 ProSitePatterns Zinc finger PHD-type signature. 632 677 IPR019786 -
Vian4g01383 1063 SMART set_7 921 1044 IPR001214 GO:0005515
Vian4g01383 1063 ProSiteProfiles PWWP domain profile. 247 316 IPR000313 -
Vian4g01383 1063 SMART PostSET_3 1047 1063 IPR003616 -
Vian4g01383 1063 ProSiteProfiles Extended PHD (ePHD) domain profile. 683 798 IPR034732 -
Vian4g01383 1063 FunFam Histone-lysine N-methyltransferase 681 800 - -
Vian4g01383 1063 Pfam PHD-finger 437 490 IPR019787 -
Vian4g01383 1063 CDD ePHD_ATX3_4_5_like 686 797 IPR041955 -
Vian4g01383 1063 CDD PHD_ATX3_4_5_like 631 677 IPR042011 -
Vian4g01383 1063 Pfam PWWP domain 248 342 IPR000313 -
Vian4g01383 1063 FunFam Histone-lysine N-methyltransferase 619 680 - -
Vian4g01383 1063 Gene3D - 242 349 - -
Vian4g01383 1063 SUPERFAMILY FYVE/PHD zinc finger 630 694 IPR011011 -
Vian4g01383 1063 FunFam Histone-lysine N-methyltransferase 896 1063 - -
Vian4g01383 1063 MobiDBLite consensus disorder prediction 826 846 - -
Vian4g01383 1063 ProSiteProfiles Post-SET domain profile. 1047 1063 IPR003616 -
Vian4g01383 1063 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 623 680 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01383 Vian-Chr4 28092105 28103199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01383 632 797 C2H2 Transcription Factor Family AT3G14740 32.948 5.71e-19 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vian4g01383 zf-HC5HC2H_2 2.2e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01383 - - gmx:100811337 1986.07