Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01382 ATGCTTTACTGCATCATTGGCATTGCAGTAAAAGGGTGTTTAAGCATTGCTAACTCGCCCAACCTTTATGAGCTGAGGTTGTTCGGGAACAAACTCACCGGGTCATTGTCGGACAATTTAGGGAAGTCCGGTCCTTTGAGGTGGCTTGACGTTTCCACCAACCGTTTCTTCGGTGGGATTCCAGCGAGCCACTGTGATCACGGCGAGTTGGAGGAGATGTTGATGCTAGGGAACCAGTTCTCCGGGGAGATACCGGCGAGTTTGGGCTCGTGTCAGAGCTTGACGCGTGTGAGGTTGGGTACGAACCGGTTGTCCGGCGACGTTCCAGCGGGTATGTGGGGCCTTCCGCATGTGTATTTGCTTGAACTGATGGGTAACTCGTTTAGTGGCTCGATTGCGAGGACCATTGGTGGGGCGAGGAATTTGTCGTCGTTGATTCTGACGAAGAACAATTTCTCGGGTGTGATCCCCGAGGAGATTGGGTGGTTGGAAAATCTTCAAGAGTTTTCTGGTGGTGATAACAGGCTCAGTGGGTCGTTGCCTGGGAGTATTGTGAATCTCGGGCAGCTTGGCACTCTTGATCTTCATTGTGTGATGGCAAAAATGGGGATAAGGAATTTCAAGAATGCTGAGAGATCTGTTGATAAATCAAAGTGGACTTTGATGTCGTTTCATAAACTGGGTTTCAGCGAAGAGGAGATCTTGAATTGCCTGGATGAAGATAATGTGATAGGAAGTGGGTCTTCCGGGAAGGTTTACAAGGTTGTGTTGACCAGCGGGGAAGTGGTTGCTGTGAAGAAGATATGGGGCGGCGTCAAGAAGGATATAGACAACGGAGATGTGGAGAGGGGTCAATTTCATCAAGACAGTGCTTTTGATGCAGAGGTTGAAACTTTGGGCAAAATTAGGCACAAGAACATTGTCAAACTGTGGTGTTGCTGCACTACTAGGGATAGCAAGCTATTGGTTTATGAGTATATGCCGAATGGTAGCCTGGGTGATTTATTGCATAGCAATAAAGGAGGGTTGTTGGACTGGCCAACTAGGTAA 1050 0.4838 MLYCIIGIAVKGCLSIANSPNLYELRLFGNKLTGSLSDNLGKSGPLRWLDVSTNRFFGGIPASHCDHGELEEMLMLGNQFSGEIPASLGSCQSLTRVRLGTNRLSGDVPAGMWGLPHVYLLELMGNSFSGSIARTIGGARNLSSLILTKNNFSGVIPEEIGWLENLQEFSGGDNRLSGSLPGSIVNLGQLGTLDLHCVMAKMGIRNFKNAERSVDKSKWTLMSFHKLGFSEEEILNCLDEDNVIGSGSSGKVYKVVLTSGEVVAVKKIWGGVKKDIDNGDVERGQFHQDSAFDAEVETLGKIRHKNIVKLWCCCTTRDSKLLVYEYMPNGSLGDLLHSNKGGLLDWPTR 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01382 349 Gene3D Ribonuclease Inhibitor 11 224 IPR032675 -
Vian4g01382 349 Gene3D Phosphorylase Kinase; domain 1 225 326 - -
Vian4g01382 349 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 18 196 - -
Vian4g01382 349 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 13 108 - -
Vian4g01382 349 FunFam Receptor-like protein kinase HSL1 222 326 - -
Vian4g01382 349 ProSitePatterns Protein kinases ATP-binding region signature. 244 267 IPR017441 GO:0005524
Vian4g01382 349 ProSiteProfiles Protein kinase domain profile. 238 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01382 349 SUPERFAMILY Protein kinase-like (PK-like) 226 349 IPR011009 -
Vian4g01382 349 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 109 201 - -
Vian4g01382 349 Pfam Protein kinase domain 240 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian4g01382 349 SUPERFAMILY L domain-like 14 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01382 Vian-Chr4 28069326 28072188 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01382 15 349 Receptor kinase-like Gene Family AT1G28440 42.038 3.82e-94 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vian4g01382 Pkinase 4e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01382 - - gmx:100776936 327.02