Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01381 ATGTATGCTGAAACCGGTCTTCTCTTCCCATATTTGCAGAACCTCTCTCAAGAGCTTCACCAGCTTGAGGAGTACTGCAAAACCCAGAAGTACAATGCTTCAATGGATGACTATGTTCAGTGTTCTGCCATGTCAGAGTATGATTTGGCAGCAGAGGGAGATCTGTTCAAAGCTCCTGAACCTATTATTGAAGAGCCAATCATGGACCTGGATCCCATGACAGCTGCCATCTCAATGATATCTTGTGGGGAAGATGTCTCTTCTCAGGGACTAAAATCCACTGATATTGATATTCTTCAAAATGATCAATTTCTGAGTGAGGTATTCTATGAATGGAAGAAGGATCTGTTACAAAAGGCAGCAATAGAGTCACCACTGTCTGAGATTCTGGAAATCAAGGTTCCTCTTCTGAACATTGATGAAAACTCAATTCAAGAAAACAAGCCACTTCCTGACATGCAGTTAGGAAAGAGTGTCAGTTCAGGAAGTTTAAGCTCAATGGATTGGATTCGTGGAGCTGCAATGAAGCCCGCTTTCATTGATATCCCTGCAATGGATTTCAATGCAGTTTATGGCATGCGAAGATCATTTAGTGAAGGAGATATAAAGACTCTCAGTAACGGAAACATGAACATTGTCCAATCACCCCTTGAGAGGCCCTTTCTCATCAGCAACTGCACCAGTGAGGAACGCTTCCAAAAGCTCTCCAGGTACAGGAATAAGAGGACAAAGAGGAACTTTGGGAGGAAAATCAAGTATGCATGTAGGAAGGCTCTTGCTGACAGTCAACCAAGAATCCGTGGAAGATTTGCAAGAAGTGAAGAATGTGAGAGCAAGAGGCAATGA 846 0.4291 MYAETGLLFPYLQNLSQELHQLEEYCKTQKYNASMDDYVQCSAMSEYDLAAEGDLFKAPEPIIEEPIMDLDPMTAAISMISCGEDVSSQGLKSTDIDILQNDQFLSEVFYEWKKDLLQKAAIESPLSEILEIKVPLLNIDENSIQENKPLPDMQLGKSVSSGSLSSMDWIRGAAMKPAFIDIPAMDFNAVYGMRRSFSEGDIKTLSNGNMNIVQSPLERPFLISNCTSEERFQKLSRYRNKRTKRNFGRKIKYACRKALADSQPRIRGRFARSEECESKRQ 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01381 281 ProSiteProfiles CCT domain profile. 231 273 IPR010402 GO:0005515
Vian4g01381 281 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 145 274 IPR045281 GO:0009909
Vian4g01381 281 Coils Coil 12 32 - -
Vian4g01381 281 Pfam CCT motif 231 273 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01381 Vian-Chr4 28062293 28066634 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01381 227 278 C2C2-CO-like Transcription Factor Family AT5G57660 50.000 2.40e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vian4g01381 CCT 3.1e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01381 - - gmx:100814332 492.271