Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01376 ATGGACTACGGAAGACTTGGACCCTCTCAGCCCATCAATCCAAGATCTTCCGGTAAGAAGAAGATTGCCTTGCTGTCACTCTTTGGAGTCATATTAATCGCTGCATCGGCGGTTACGGCCTTTGCGCTACTCTCTCCAACCGGTACAAAACCGGATGGTTCAAGGCTTCGTCGCAATCCTACACAAGCCATTTCACGCACGTGCAGCAAAACACGATTTCAGACAGTGTGCGTCAATTCGCTGCTGGACTTTCCCGGATCCCAGGCTGCATCTGAGAATGACCTGCTTCACATTTCCTTCAACGTCACGCTGCAGCACTTCTCCAGGGCGCTCTACACTTCCGCCGCAATTTCCTACGCCACCATGGATCCACGCGTCCGCGCCGCCTACGACGACTGCCTCGAACTCCTCGACGATTCCGTCGACGCGCTTGCGCGCTCCCTCAGCACCGTCTCCCTCGGTGCCGTTGGCTCCGCCAACGAAGACGTCCTCACCTGGCTCAGCGCCGCCCTCACCAACCAGGACACCTGCGCGGAGGGCTTTGCCGACGCCGCCGGTCCAGTGAAGGACCAGATGAGTAACAACCTCAAGGACTTGTCGGAGCTCGTCAGCAATTGCCTCGCCATTTTCTCGGCAGCGGCCAACGGCGACGACTTCTCGGGCGTTCCCATTCAGAACAGGAGACGGTTGATGACAATGCGAGCCGATAATTTCCCGAGATGGTTGAATCGACGAGATAGGAGATTGTTGAACTTGCCTCTGTCGGCGATACAAGCCGATGTCGTGGTTTCCAAGGACGGTAACGGAACCGTTAAGACCATCGCCGAAGCCATTAAGAAGGTCCCGGAATACAGTTCACGCCGCTTCATTATCTACGTCAGGGCAGGAAGGTATGAAGAGGAGAATTTAAAGGTGGGGAGGAAGAAAACAAATGTGATGTTCGTAGGGGACGGTAAGGGCAACACCGTCATCACAGGAGGGAAAAATTATTATAACAACCTCACCACATTTCACACGGCATCCTTCGGTAAATTCCTTCCCTTTCTCCTCTCCCTCATGCTTATTACTATGATTTCCTCAGTTTAA 1086 0.5378 MDYGRLGPSQPINPRSSGKKKIALLSLFGVILIAASAVTAFALLSPTGTKPDGSRLRRNPTQAISRTCSKTRFQTVCVNSLLDFPGSQAASENDLLHISFNVTLQHFSRALYTSAAISYATMDPRVRAAYDDCLELLDDSVDALARSLSTVSLGAVGSANEDVLTWLSAALTNQDTCAEGFADAAGPVKDQMSNNLKDLSELVSNCLAIFSAAANGDDFSGVPIQNRRRLMTMRADNFPRWLNRRDRRLLNLPLSAIQADVVVSKDGNGTVKTIAEAIKKVPEYSSRRFIIYVRAGRYEEENLKVGRKKTNVMFVGDGKGNTVITGGKNYYNNLTTFHTASFGKFLPFLLSLMLITMISSV 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01376 361 NCBIfam pectinesterase inhibitor domain 37 211 IPR006501 GO:0004857
Vian4g01376 361 CDD PMEI-like_3 68 215 - -
Vian4g01376 361 SMART PMEI_2 59 209 IPR006501 GO:0004857
Vian4g01376 361 FunFam Pectinesterase 60 213 - -
Vian4g01376 361 PANTHER PECTINESTERASE 35 343 - -
Vian4g01376 361 Pfam Pectinesterase 260 343 IPR000070 GO:0030599|GO:0042545
Vian4g01376 361 SUPERFAMILY Pectin lyase-like 255 342 IPR011050 -
Vian4g01376 361 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 62 211 IPR035513 -
Vian4g01376 361 Gene3D Invertase/pectin methylesterase inhibitor family protein 61 213 IPR035513 -
Vian4g01376 361 Pfam Plant invertase/pectin methylesterase inhibitor 63 209 IPR006501 GO:0004857
Vian4g01376 361 Gene3D - 254 345 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01376 Vian-Chr4 27872879 27874658 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01376 1 342 Carbohydrate Esterase AT5G53370 56.983 2.89e-139 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01376 - - gmx:100808236 526.554