Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01370 ATGGACTTGGAAAGCGTTGAGTGTGTGTCATCCTCGGATGGCATGGATGAGGATGAGATCCACACCAATCATCATCACTCTGAGTTTTCTTCCACAAAGCCTCGCAATGGAGGCACCAATAACGTTAATTCTGTGGGGTCCACCGCCCTTGCTCCGGCTACCAGCGTCCATGAGTTGCTGGAATGTCCTGTGTGTACTAATTCAATGTACCCTCCAATCCACCAGTGTCACAATGGCCACACACTCTGTTCCACTTGTAAAACAAGGGTGCACAACCGATGTCCCACTTGTAGACAAGAGCTTGGAGATATTAGGTGTCTGGCACTGGAAAAGGTGGCTGAATCACTTGAGCTACCTTGCAAGTACTACTCCCTTGGATGTTCAGAAATCTTTCCATACTACAGCAAGCTTAAGCATGAGACAGTATGCAATTATAGACCATATAGTTGCCCTTATGCTGGATCAGAGTGTTCTGTCGTGGGAGATATTCCCTTCCTTGTTGCTCATTTAAGGGATGATCATAAAGTGGACATGCACACAGGATGCACATTCAACCATCGTTATGTGAAGTCAAATCCACGTGAAGTGGAGAATGCAACCTGGATGCTCACAGTGTTTCATTGTTTTGGCCAATATTTCTGCCTTCATTTTGAAGCTTTCCAGCTTGGCATGGCACCTGTTTACATGGCATTTCTTCGTTTTATGGGTGATGAGAATGAGGCTCGGAATTATAGCTATAGCCTAGAGGTTGGGGCCAATGGTAGAAAACTCATCTGGGAGGGTACGCCACGAAGTGTTCGAGATAGCCACCGTAAAGTGAGGGATAGCCACGATGGGCTCATCATTCAAAGAAATATGGCTCTATTTTTCTCTGGTGGGGACAGAAAGGAGCTGAAACTCAGAGTTACAGGAAGAATATGGAAGGAGCAACAGAATTCTGATGCTGGTGTGTGCATGCCAAATCTCTGTAGTTGA 975 0.4595 MDLESVECVSSSDGMDEDEIHTNHHHSEFSSTKPRNGGTNNVNSVGSTALAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCSEIFPYYSKLKHETVCNYRPYSCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNSDAGVCMPNLCS 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01370 324 MobiDBLite consensus disorder prediction 14 31 - -
Vian4g01370 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 168 IPR013083 -
Vian4g01370 324 Pfam Seven in absentia protein family 104 303 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vian4g01370 324 CDD RING-HC_SIAHs 60 98 - -
Vian4g01370 324 SUPERFAMILY TRAF domain-like 115 307 - -
Vian4g01370 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 104 IPR013083 -
Vian4g01370 324 FunFam E3 ubiquitin-protein ligase SINAT3 114 170 - -
Vian4g01370 324 CDD Sina 176 304 - -
Vian4g01370 324 FunFam E3 ubiquitin-protein ligase SINAT5-like 171 303 - -
Vian4g01370 324 SUPERFAMILY RING/U-box 53 101 - -
Vian4g01370 324 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 39 309 - -
Vian4g01370 324 FunFam E3 ubiquitin-protein ligase SINAT3 11 113 - -
Vian4g01370 324 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 169 303 IPR008974 GO:0005515
Vian4g01370 324 MobiDBLite consensus disorder prediction 1 45 - -
Vian4g01370 324 ProSiteProfiles Zinc finger SIAH-type profile. 115 175 IPR013010 GO:0008270
Vian4g01370 324 ProSiteProfiles Zinc finger RING-type profile. 62 98 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01370 Vian-Chr4 27739944 27743325 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01370 30 310 C3H Transcription Factor Family AT2G41980 75.801 5.93e-165 459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01370 4 27739944 27743325 Vian4g01370 4 27739944 27743325 ECH