Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01367 ATGGGGAAGAAAGGAGGCAGCTGGTTTTCCTCCGTCAAAAAAGTTTTCAAATCCTCTTCTAATAAGGACTCGCCGGTGCCGGAGAAGAAGAAAGACAACAAGAAGGAAGAACAATGGCAGCTGCATGAGGCCCCAGAGGAGGTGTCCTTGGAGCATTTTCCTGCTGAGAGTTCTCCTGATATTACCAATGAAGGGAGTGCCACGTCAACACCGGTGACTGAAGATAGAAGCCATGCTATGGCCTTTGCAGCAGCAACTGCTGCCGCTGCCGAAGCCGCAGTAGCAGCTGCTCAAGCGGCCGCTAGAGTTGTGAGATTGGCAGGTTATGGACGCCAATCCACGGAAGAAAGAGCTGCAATACTCATTCAATCATACTACAGAGGTTACCTAGCTCGACGTGCTTTGCGGGCTTTGAAGGGATTGGTGAGACTTCAAGCGCTTGTGAGGGGACACAATGTGAGAAAGCAAGCCCAGATGACAATGCGATGCATGCATGCATTAGTCCGAGTACAGGCAAGAGTAAGAGCTCGAAGACTCCAGTTGACTCAAGAGAAGTATCAGAGAAGAGTTGAGGAACAGGTCCAAAGAGGACTAGAGGAACAACAACAACCTAAGCTACTTTTGAGCCCCATCAAAATGTTAGACATGGATACATGGGACAATAGGCGTCAAAGTAGCCAACAGATTAAGGAGAATAATTTGAGGAAACATGAAGCTGCAATGAAGAGGGAGAGAGCTCTTGCATACGCTTTCAACTGTCAGCAGAAGCAAAATCCAAATGATGATGATGTTGGAAGCTATAGCAATGAGCGTGAAAGAGCCGAAATGGATTGGAACTGGTTGGAACGGTGGATGTTATCACAATCACAGAACTCAAGGCACTTTGGGTCACGGGAGAACCTTTATAGAACTCTTGCTACTGCAACTTCCACCACTGATGACATGTCTGAAGAAAAAACAGTTGAAATTGACATGGCTGCAACTCTGGATTCAGCTCATGCTAACATGGGTCTCATCCACCAAGAATCTTTTGACACAAGCCCAATATCCAATAGGTACCACCAGCGCCACCACAGTGCAGGTGTACCAAGCTACATGGCCCCAACTCAGTCTGCAAAGGCCAAGGCTCGTAATCAAGGCCTGTTTAAAAATAGGGGTTCACCTGGGCCTAACTGGAACTCGTCCACCAGGAGAAGTTCCGTTCTAGGGCTGGGCTGTGACTCAACTAGCTCTGGTGGGCCCACTGCAGCTCATGGGTTACCAAGAAGTCCAAGCCCAAAAATTAATGAAATTCGCCTCCAATCCAGACGGATTTCGGGTAGCAGCCCGGATAATGTTCACATTGAGGATTGGGCCCTTCCCCTTGGAACCAGTGGTTGGACTTGA 1386 0.4841 MGKKGGSWFSSVKKVFKSSSNKDSPVPEKKKDNKKEEQWQLHEAPEEVSLEHFPAESSPDITNEGSATSTPVTEDRSHAMAFAAATAAAAEAAVAAAQAAARVVRLAGYGRQSTEERAAILIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMHALVRVQARVRARRLQLTQEKYQRRVEEQVQRGLEEQQQPKLLLSPIKMLDMDTWDNRRQSSQQIKENNLRKHEAAMKRERALAYAFNCQQKQNPNDDDVGSYSNERERAEMDWNWLERWMLSQSQNSRHFGSRENLYRTLATATSTTDDMSEEKTVEIDMAATLDSAHANMGLIHQESFDTSPISNRYHQRHHSAGVPSYMAPTQSAKAKARNQGLFKNRGSPGPNWNSSTRRSSVLGLGCDSTSSGGPTAAHGLPRSPSPKINEIRLQSRRISGSSPDNVHIEDWALPLGTSGWT 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01367 461 Gene3D - 115 165 - -
Vian4g01367 461 SMART iq_5 114 136 IPR000048 GO:0005515
Vian4g01367 461 SMART iq_5 137 158 IPR000048 GO:0005515
Vian4g01367 461 MobiDBLite consensus disorder prediction 381 428 - -
Vian4g01367 461 PANTHER IQ-DOMAIN 5-RELATED 1 401 - -
Vian4g01367 461 ProSiteProfiles IQ motif profile. 139 166 IPR000048 GO:0005515
Vian4g01367 461 MobiDBLite consensus disorder prediction 23 50 - -
Vian4g01367 461 ProSiteProfiles IQ motif profile. 115 143 IPR000048 GO:0005515
Vian4g01367 461 Pfam IQ calmodulin-binding motif 142 157 IPR000048 GO:0005515
Vian4g01367 461 Pfam IQ calmodulin-binding motif 116 136 IPR000048 GO:0005515
Vian4g01367 461 Pfam Protein of unknown function (DUF4005) 347 402 IPR025064 -
Vian4g01367 461 Coils Coil 176 196 - -
Vian4g01367 461 MobiDBLite consensus disorder prediction 59 73 - -
Vian4g01367 461 MobiDBLite consensus disorder prediction 15 73 - -
Vian4g01367 461 MobiDBLite consensus disorder prediction 384 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01367 Vian-Chr4 27670237 27673653 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01367 1 432 IQD Protein Family AT3G49260 50.109 1.03e-96 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01367 - - gmx:100808965 683.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01367 4 27670237 27673653 Vian4g01367 4 27670237 27673653 ECH