Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01359 ATGTTTGAGAAAATGGATGATCAACTTCTGGATGCAATGTGTGACAAACTCCAGCCAGTGCTATACACAGAAGAAAGCTGCATTGTCCGGGAAGGAGATCCTGTTGATGAGATGCTCTTCATAATGCGCGGCAAGCTATTGACTGTAACCACTAATGGTGGAAGAACAGGCTTCTTTAACTCTGAATACCTCAAGGCTGGTGACTTTTGTGGAGAGGAACTTCTCACATGGGCTTTAGATCCTCACTCCTCATCCAACCTTCCCATATCAACTAGGACTGTCCAAACTCTTTCAGAAGTGGAAGCATTTTCTCTAAAAGCCGATGACTTGAAGTTTGTTGCTTCACAGTTCCGGCGCCTTCATAGTAAGCAACTTCGTCACACTTTCAGGTTTTATTCACAACAATGGCGTACATGGGCTGCATGTTTCATACAAGCAGCGTGGAGGCGTTATAGTAAAAAGAAGCTGGAAGAGTCTCTGAGGGAAGAAGAGAATCGTTTGCAAGATGCATTAGCCAAAGCAGGTGGTAGCTCACCTAGTCTAGGTGCCACAATATATGCTTCAAGGTTTGCAGCTAATGCACTCAGACTTTTACGTAGAAATAGCACAACAAAGACCAGGGTGCCAGAAAGAATATCACCCATACTGCTGCAGAAGCCTGCTGAGCCTGATTTTACTTCTGAAGAACAATAG 693 0.443 MFEKMDDQLLDAMCDKLQPVLYTEESCIVREGDPVDEMLFIMRGKLLTVTTNGGRTGFFNSEYLKAGDFCGEELLTWALDPHSSSNLPISTRTVQTLSEVEAFSLKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYSKKKLEESLREEENRLQDALAKAGGSSPSLGATIYASRFAANALRLLRRNSTTKTRVPERISPILLQKPAEPDFTSEEQ 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01359 230 FunFam Cyclic nucleotide-gated ion channel 1 1 117 - -
Vian4g01359 230 ProSiteProfiles cAMP/cGMP binding motif profile. 1 85 IPR000595 -
Vian4g01359 230 Coils Coil 153 173 - -
Vian4g01359 230 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 225 - -
Vian4g01359 230 Gene3D Jelly Rolls 1 119 IPR014710 -
Vian4g01359 230 Pfam Cyclic nucleotide-binding domain 21 112 IPR000595 -
Vian4g01359 230 SUPERFAMILY cAMP-binding domain-like 1 119 IPR018490 -
Vian4g01359 230 CDD CAP_ED 1 132 IPR000595 -
Vian4g01359 230 SMART cnmp_10 1 132 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01359 Vian-Chr4 27496423 27497115 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01359 1 229 Ion Channels AT5G53130 86.147 4.65e-132 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01359 K05391 - gmx:100815774 422.55