Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01356 ATGGAGGTTTCGCTTTCACCGTTAGAGGGTTTTTCCGGTCACGATTGGACACAGCAGTTGCCGTATTCAAGTAAGCAACTTTGTTTGAATGAGTTCCCAGATTTGGAAAACCTGGACCTCGATTTTAGCCTCCCACCGCTGGGTGAAGATTTGGAGGAGGTGGAGCAGAAGCCCTTGAACATTATTGTTGTTCCCGAAGAGGGTCATTGCGGTCGCGAGAAGGGTTTTGGGGATGCTTTATTGGCGATTGAAAATGGGTCTGCGATTTGTGTGAAGAAAGAGGAGGTGCAGAATATGGAGCAGATGGCAGTGCCTAGTGCTAGTAGTGGCAGTAAGAAGAAGAAGCCATGTGCTTTGGAATTTGAGGAGATAAAGAAGCATTTTGATGTTCCCATTAATGAAGCTGCGAAGCAAATGAATGTGGGGTTAACCATGTTGAAGAGAAGGTGCAGGGAGCTTAACATCATGAGGTGGCCCCATAGGAAACTCAAGAGCTTGCAATTACTCATCGAGAATGTTAAGGAATTGGGTTTGGCAGACGAGGTTCCCATGTTGGAGAAGCATAAAAGGTTGTTGGAAAAATTACCAGGACTGGAATTATGTGCAAAAGCCAAGAAGCTGAGGCAAGCTTGTTTCAAAGCTAATTACAAGAGGAGAAGGTTTATGGGTATGACACTCCAAGCTTGA 687 0.4527 MEVSLSPLEGFSGHDWTQQLPYSSKQLCLNEFPDLENLDLDFSLPPLGEDLEEVEQKPLNIIVVPEEGHCGREKGFGDALLAIENGSAICVKKEEVQNMEQMAVPSASSGSKKKKPCALEFEEIKKHFDVPINEAAKQMNVGLTMLKRRCRELNIMRWPHRKLKSLQLLIENVKELGLADEVPMLEKHKRLLEKLPGLELCAKAKKLRQACFKANYKRRRFMGMTLQA 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01356 228 Pfam RWP-RK domain 119 166 IPR003035 -
Vian4g01356 228 ProSiteProfiles RWP-RK domain profile. 101 188 IPR003035 -
Vian4g01356 228 PANTHER PROTEIN RKD4 101 222 IPR044607 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01356 Vian-Chr4 27465550 27466595 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01356 119 223 AtRKD Transcription Factor Family AT5G53040 62.857 4.37e-40 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vian4g01356 RWP-RK 5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01356 - - pvu:PHAVU_009G051600g 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01356 4 27465550 27466595 Vian4g01356 4 27465550 27466595 ECH