Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01326 ATGGGAGGTTCATCGGAGACGAAGTTCTTGCAGGACCTGTTGTTGTACGCTGCGAGCGCGGCGTTGAGTTGCTTGGTGTTGTTCGCGGGACTCAGACACCTCGATCCTAATCGCGAAGCTTCCAAAAAGGTTCTTGAGCACAAGAAAGAGATTGCAAAGCGTCTAGGTCGCCCCCTTATTCAGACTAACCCTTATGAGGATGTTATAGCCTGTGATGTTATAAATCCTGACCACATTGATGTGGAGTTTAATTCTATTGGGGGACTGGAAACCATCAAGCAAGCTTTGTTTGAGCTTGTTATTCTGCCTCTAAAAAGACCAGATTTGTTTTCACATGGTAAGCTTCTTGGACCACAAAAGGGGGTTCTGTTGTATGGACCACCTGGCACTGGAAAAACCATGCTTGCCAAAGCTATTGCTAAGGAGTCGGGAGCAGTTTTTATCAATGTGAGGATATCAAACCTTATGAGCAAGTGGTTTGGGGATGCCCAAAAGCTTGTGGCTGCGGTATTTAGCCTGGCTTATAAGCTTCAGCCTGCCATCATTTTCATTGATGAAGTAGACAGTTTTTTGGGTCAACGCCGTACAACAGATCATGAGGCTTTGTTAAACATGAAAACTGAGTTTATGGCTCTGTGGGACGGATTTACTACGGATCAGAATGCTCGAGTTATGGTTCTTGCAGCGACAAACCGTCCTTCAGAACTTGATGAAGCAATACTACGACGTCTTCCTCAAGCCTTTGAAATCGGAATTCCTGACCAAAGGGAGAGGACTGAAATATTGAAGGTTATCTTAAAGGGTGAGAGGGTTGAAGACAACATAGAGTTTGGTCATATAGCAGGCTTGTGTGAGGGTTACACTGGTTCAGATCTATTTGATCTTTGCAAGAAAGCTGCCTATTTTCCTATTAGAGAACTGCTAGATGAAGAGAAGAAAGGAAAACGATCTCCTGCACCTAGACCTTTGTCCCAGTTAGATTTGGAGAAGGCCATTGCCACTTCACAGAAGACAAAGGTTGCTGCAAGTGAATACGCTGGATTCAGCCTTCAGTCACCTTCAAGATGGTCGGTGCCTGGTGATTCAGGTGATTCTCAGATTCAGGCTGCAATCAATGTATTCTCTAAGCTTGTGGTTTCTCACATGATTAACCTCCAACCAGAATCCCAAGATCCTTAA 1179 0.4461 MGGSSETKFLQDLLLYAASAALSCLVLFAGLRHLDPNREASKKVLEHKKEIAKRLGRPLIQTNPYEDVIACDVINPDHIDVEFNSIGGLETIKQALFELVILPLKRPDLFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTTDHEALLNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGIPDQRERTEILKVILKGERVEDNIEFGHIAGLCEGYTGSDLFDLCKKAAYFPIRELLDEEKKGKRSPAPRPLSQLDLEKAIATSQKTKVAASEYAGFSLQSPSRWSVPGDSGDSQIQAAINVFSKLVVSHMINLQPESQDP 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01326 392 Gene3D - 253 335 - -
Vian4g01326 392 CDD RecA-like_ATAD1 85 250 - -
Vian4g01326 392 Pfam ATPase family associated with various cellular activities (AAA) 122 251 IPR003959 GO:0005524|GO:0016887
Vian4g01326 392 SMART AAA_5 118 254 IPR003593 GO:0016887
Vian4g01326 392 Gene3D - 80 338 IPR027417 -
Vian4g01326 392 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 44 344 - -
Vian4g01326 392 Pfam AAA+ lid domain 275 310 IPR041569 -
Vian4g01326 392 ProSitePatterns AAA-protein family signature. 224 243 IPR003960 GO:0005524|GO:0016887
Vian4g01326 392 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 310 IPR027417 -
Vian4g01326 392 FunFam ATPase family AAA domain-containing protein 1 80 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01326 Vian-Chr4 26900641 26906113 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01326 39 318 Calmodulin-binding Proteins AT3G56690 32.394 2.10e-38 145