Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01314 ATGGGGATTCTCAGCGATCATCATCACAACTCTCCAAAACACCACCACCACCATCATTACCACATGAGCTTTCACTTGCACATTCCTCACCTCCACTTTCCTCACCACCACCAGGAGAAGAAGGACCTGAAGGACGTTCCAAAAGGGTGTTTGGCGGTGTTGGTAGGGCAAGGGGAGGAGCAACAGAGGTTTGTTATCCCTGTCATGTACATGAACCACCCACTGTTCATGAAGTTGCTGAAGGAAGCCGAAGACGAATACGGGTTCCAGCAGAAAGGCCCCATCACCATCCCGTGCCACGTCGAGCACTTCCGTACCGTCCAAGGCATCATCGACAGGGAGAAATGCCTCCACCACCACCACCACCACCACCACCATGCTTGGTGCTTCAAAGTTTGA 399 0.5263 MGILSDHHHNSPKHHHHHHYHMSFHLHIPHLHFPHHHQEKKDLKDVPKGCLAVLVGQGEEQQRFVIPVMYMNHPLFMKLLKEAEDEYGFQQKGPITIPCHVEHFRTVQGIIDREKCLHHHHHHHHHAWCFKV 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01314 132 Pfam Auxin responsive protein 40 107 IPR003676 GO:0009733
Vian4g01314 132 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 38 106 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01314 Vian-Chr4 26608226 26608624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01314 45 105 Calmodulin-binding Proteins AT5G20810 57.377 2.54e-18 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01314 K14488 - gmx:100526867 187.193