Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01300 ATGTCACAGCCAAGGCAAAACAAGATGATGAGTCCAAACCTTGGAAAACAAGTTGGTGACACAACCTATACTAAGATCTTTGTTGGAGGATTGGCTTGGGAGACAAAGAGAGACTCTCTGAAACGCTATTTTGATCAGTTTGGGGAGATCTTAGAGGCGGTTGTCATCACCGATAGAATCACTGGAAGATCAAAAGGATATGGCTTTGTCACCTTTAGGGACCCAAATTCTGCATCAAGGGCTTGTCTCGATCCCTATCCTGTGATTGATGGAAGGAGAGCTAATTGTAACCTTGCAGCCCTTGGTGCCCAGAAATTTGATCCATCAACAACAGGAAGACAAAAATTCAGTAGCCCTTCATGGAATATGGCACCAGTCCCATTGCAAGGCACCTCCACATATTACAATCAACACATACCTCACTACCCAATTTCCTATCCAACCTACAGGTATCCTGGTTTTACTCACCCACAAGACTTGTATGAAATGAACTACAATAATGCATATGGTGGACAGCAGTTTCCCCTCCGCTGGTATCCAGCATATTACCAGCCCTTTTATGGCCTTGGCAGACAGATTATTCCAACAACCTATGTGAAAAAGGTCATACCAGACACGTCTCAGGAGCTCACAGTTGTTGGTTTTTCAGAGCCTATTTCATCCTCTCCTTCAATTCCCACCACTGGATTAGTCACCGGAACAGTACCTGCGACAGAAGTGGTAGAATCCCCTCAAGAACAGACATCTTCAACTACTTAA 759 0.4427 MSQPRQNKMMSPNLGKQVGDTTYTKIFVGGLAWETKRDSLKRYFDQFGEILEAVVITDRITGRSKGYGFVTFRDPNSASRACLDPYPVIDGRRANCNLAALGAQKFDPSTTGRQKFSSPSWNMAPVPLQGTSTYYNQHIPHYPISYPTYRYPGFTHPQDLYEMNYNNAYGGQQFPLRWYPAYYQPFYGLGRQIIPTTYVKKVIPDTSQELTVVGFSEPISSSPSIPTTGLVTGTVPATEVVESPQEQTSSTT 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01300 252 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 81 IPR000504 GO:0003723
Vian4g01300 252 PANTHER BOULE-RELATED 9 215 - -
Vian4g01300 252 SUPERFAMILY RNA-binding domain, RBD 10 99 IPR035979 GO:0003676
Vian4g01300 252 Gene3D - 1 114 IPR012677 -
Vian4g01300 252 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
Vian4g01300 252 SMART rrm1_1 25 97 IPR000504 GO:0003723
Vian4g01300 252 CDD RRM_RBM24_RBM38_like 24 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01300 Vian-Chr4 26345737 26347111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01300 8 100 C2H2 Transcription Factor Family AT2G19380 38.710 1.64e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01300 - - gmx:100788634 433.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01300 4 26345737 26347111 Vian4g01300 4 26345737 26347111 ECH