Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01298 ATGGCGGTTGCTGAGAATGTTGGGGCCAAAATCGGTTCTTCGAGTCAGAGTTTGGACAGCGGTGTAGTGTCTGCGGATTCGAGTGAGGTCGAGAAATCGAAAACTAGAAGCGATCAGAATCTGACCAACGGTGTGTTCACCCATCAACAGCATCCAGAGAGAGTTCCCAGCTCTACGACAGTTCCTAACGGAAATTACAGCTACAATACTCAGATGCACGCAAATGGGGTGAACAACGATGGGTATGGGATGAATGGGGTCATGAGTGGGGAGAATGGGGGTGACAGTTTCAAGCATGACATGAGGGATTTGGAAGAGCTTTTATCAAAGTTGAACCCCATGGCTGAGGAATTTGTGCCCCCATCACTAACCAATACTCATGGCTTTTTAGCTGGACCTAATACTGGGTTTGGTTACACTAACAATTTTATGCTGCCGAATAACTTTGGCAGTGCTAATGGACAAATTAACAATAGAAGGAGGAAGAATGTCTATAATCCTGGGAAGCGAAGAGTGAATCATAAAATGGATATGGAGAAAAGAGAAGAGATGATTCGGAGGACCGTTTATGTATCTGACATTGATCAACTGGTTACTGAAGAGCAGCTGGCTGCTCTCTTTCTCAACTGTGGCCAGGTTGTTGATTGCCGTGTATGTGGAGATCCTAATTCTATTCTTCGATTTGCTTTCATTGAGTTTACAGATGAAGATGGAGCAAGGGCTGCCTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCACTGAGAGTGTTGCCTTCAAAAACTGCCATTGCACCTGTGAATCCAACATTTTTGCCTAGGTCTGAAGATGAAAGGGAAATGTGCTCAAGAACTATTTATTGCACAAATATCGACAAGAAGCTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGTGGAGAGGTTCATCGCTTGAGGCTTCTTGGGGATTATCATCATTCAACTCGAATTGCATTTGTAGAGTTTGCACTGGCTGAGAGTGCAATTGCTGCTCTGAGCTGTAGTGGTGTGATTTTGGGTTCACTGCCTATAAGGGTAAGTCCATCAAAGACACCTGTCCGCCCTCGTGCTCCTCGATCCTCCATTCACTGA 1119 0.4477 MAVAENVGAKIGSSSQSLDSGVVSADSSEVEKSKTRSDQNLTNGVFTHQQHPERVPSSTTVPNGNYSYNTQMHANGVNNDGYGMNGVMSGENGGDSFKHDMRDLEELLSKLNPMAEEFVPPSLTNTHGFLAGPNTGFGYTNNFMLPNNFGSANGQINNRRRKNVYNPGKRRVNHKMDMEKREEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEDGARAALSLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVHRLRLLGDYHHSTRIAFVEFALAESAIAALSCSGVILGSLPIRVSPSKTPVRPRAPRSSIH 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01298 372 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 353 IPR000504 GO:0003723
Vian4g01298 372 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 252 IPR000504 GO:0003723
Vian4g01298 372 MobiDBLite consensus disorder prediction 9 28 - -
Vian4g01298 372 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 106 365 - -
Vian4g01298 372 SMART rrm1_1 188 258 IPR000504 GO:0003723
Vian4g01298 372 SMART rrm1_1 285 356 IPR000504 GO:0003723
Vian4g01298 372 MobiDBLite consensus disorder prediction 1 61 - -
Vian4g01298 372 CDD RRM2_CID8_like 280 361 IPR034825 -
Vian4g01298 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 360 IPR000504 GO:0003723
Vian4g01298 372 FunFam Polyadenylate-binding protein-interacting protein 11 152 264 - -
Vian4g01298 372 FunFam Polyadenylate-binding protein-interacting protein 10 278 356 - -
Vian4g01298 372 Gene3D - 271 367 IPR012677 -
Vian4g01298 372 Gene3D - 149 264 IPR012677 -
Vian4g01298 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 262 IPR000504 GO:0003723
Vian4g01298 372 Pfam Ataxin-2 C-terminal region 108 122 IPR009818 -
Vian4g01298 372 MobiDBLite consensus disorder prediction 37 61 - -
Vian4g01298 372 SUPERFAMILY RNA-binding domain, RBD 146 260 IPR035979 GO:0003676
Vian4g01298 372 CDD RRM1_CID8_like 185 264 IPR034823 -
Vian4g01298 372 SUPERFAMILY RNA-binding domain, RBD 275 366 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01298 Vian-Chr4 26270105 26275295 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01298 186 348 Eukaryotic Initiation Factors Gene Family AT1G34140 25.150 4.76e-10 58.9