Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01297 ATGAGTGGCCGGTTTTCTCGCACAATTTACGTCGGCAACCTGCCTTCTGACATCAGAGAGTCAGAAATTGAAGATCTCTTCTACAAGTATGGTCGTATAATGGATATTGAATTGAAGATTCCTCCCCGCCCTCCATGTTATTGTTTTGTTGAGTTTGATAATGCTCGAGATGCTGAAGATGCAATTCGAGGTAGAGATGGATACAACTTTGATGGTTGTCGGTTACGGGTGGAACTTGCTCATGGCGGTAGAGGACCATCGTCAAGTGATCGACGTGGATATGGAGGAAGTGGTGGGGCTGGGGCTGGGGCTGGGGCTGGTGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGTTATTGTTCGGGGACTCCCATCTTCTGCATCCTGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTTTGTTTTGCTGAGGTTTCTCGTGATAGTGAAGGGACTTTTGGCATTGTTGATTACACTAATTATGACGACATGAAGTATGCTATTCGCAAACTGGATGACACCGAGTTTAGAAATCCTTGGGCGCGAGCCTATATTCGGGTGAGAAAGTATGAGAGTAGTCGTTCTAGGAGCCGCAGCAGAAGCCCCAGAAGCCCCAGCAGGAGTAGGAGTCCGAAAAGGGCCAGAAGTAGATCCTTGGAGCGTTCTGTGTCTAGGTCACGATCTAGATCACGATCAGCATCACCAATCAAATCTTCAAGGCCAAGATCACGCTCACGGTCTGGATCTCCTCGCCAGGTGCTGTCAGGTAGTGGATGA 792 0.4848 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKIPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGSGGAGAGAGAGGGRFGISRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVRKYESSRSRSRSRSPRSPSRSRSPKRARSRSLERSVSRSRSRSRSASPIKSSRPRSRSRSGSPRQVLSGSG 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01297 263 MobiDBLite consensus disorder prediction 196 263 - -
Vian4g01297 263 MobiDBLite consensus disorder prediction 218 232 - -
Vian4g01297 263 Gene3D - 119 196 IPR012677 -
Vian4g01297 263 FunFam serine/arginine-rich splicing factor SR34A-like 119 196 - -
Vian4g01297 263 CDD RRM2_SF2_plant_like 119 194 - -
Vian4g01297 263 SMART rrm1_1 120 189 IPR000504 GO:0003723
Vian4g01297 263 SMART rrm1_1 8 78 IPR000504 GO:0003723
Vian4g01297 263 FunFam serine/arginine-rich splicing factor SR34A-like 2 118 - -
Vian4g01297 263 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 183 IPR000504 GO:0003723
Vian4g01297 263 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Vian4g01297 263 Gene3D - 2 115 IPR012677 -
Vian4g01297 263 SUPERFAMILY RNA-binding domain, RBD 6 189 IPR035979 GO:0003676
Vian4g01297 263 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 7 253 - -
Vian4g01297 263 MobiDBLite consensus disorder prediction 81 106 - -
Vian4g01297 263 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 197 IPR000504 GO:0003723
Vian4g01297 263 MobiDBLite consensus disorder prediction 233 263 - -
Vian4g01297 263 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01297 Vian-Chr4 26220979 26225177 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01297 6 203 Eukaryotic Initiation Factors Gene Family AT4G34110 23.301 6.20e-08 51.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01297 4 26220979 26225177 Vian4g01297 4 26220979 26225177 ECH