Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01294 ATGACCGCCGAGAAGATCAACGCTTTGTTAAAGGCTGCCAATGTCTCCGTCGAGTCCTACTGGCCAAGCCTGTTCGCCAAACTCGCTCAGAATAAAAACATCGAAGACCTCATCTTGAACGCCGGTTCAGGCGGAGGTGCCGCCGTTGCTGTTGCCGCTCCCGCCGCCGGTGGTGCTGGTGCCGCTGCCGCGGCACCCGCTGCTGAGGAAAAGAAGGAAGAAGTGAAGGAAGAAAGTGACGACGATATGGGATTCGGTTTGTTTGATTAG 270 0.5593 MTAEKINALLKAANVSVESYWPSLFAKLAQNKNIEDLILNAGSGGGAAVAVAAPAAGGAGAAAAAPAAEEKKEEVKEESDDDMGFGLFD 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01294 89 Gene3D - 1 42 IPR038716 -
Vian4g01294 89 MobiDBLite consensus disorder prediction 67 83 - -
Vian4g01294 89 MobiDBLite consensus disorder prediction 62 89 - -
Vian4g01294 89 Pfam 60s Acidic ribosomal protein 2 88 - -
Vian4g01294 89 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 2 89 - -
Vian4g01294 89 FunFam 60S acidic ribosomal protein P2 1 42 - -
Vian4g01294 89 Hamap 50S ribosomal protein L12 [rpl12]. 2 89 IPR027534 GO:0003735|GO:0005840|GO:0006414
Vian4g01294 89 PRINTS Ribosomal protein P2 signature 4 15 IPR001859 GO:0003735|GO:0005840|GO:0006412
Vian4g01294 89 PRINTS Ribosomal protein P2 signature 61 75 IPR001859 GO:0003735|GO:0005840|GO:0006412
Vian4g01294 89 PRINTS Ribosomal protein P2 signature 76 87 IPR001859 GO:0003735|GO:0005840|GO:0006412
Vian4g01294 89 CDD Ribosomal_P1 2 88 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01294 1 89 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 55.435 8.77e-29 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01294 K02942 - gmx:100801741 104.375