Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01289 ATGTTTTCCGTTTTCACCACTGCCACTTCACTAAACACAATTTCGTCTACTTGGGCATTGCAGAGATGGTGTTGCCACTTGCTGCTCTGTTTGGTAACTGTTGGTGTTCCTGTTCTTCTACCATCTTCTGTCCATTCCCACTACCAAACCCACCCTCTCGTTATTCTTCAACCTTTCACACTAAGCTTCAGCCTCAACCCCAATGCTCACTGGCTAAAATCCACGTCAAACCCCAACTATCAAACCGCGACTCCATTCGTCGCCGTCGCAGCACCAATTCCCTTCCCATTGCTGATGCTCAAGCCGGTAGCGTCGTTCTTTGCTCTGTTTCAAGAAATTGGGATTGGCTTTGAGGAAACTCGAGTGCTCTTCTCCAACAACCCTGACCTAACCTCTGTGTCTGTAGAATCATTGCGCGCTCGCCTTAGTTCTCTACGATCTCTCGACTTCGACCCTCTCGCACTCGGCAAATTAATCACAAAGCGTCCAACTGTCCTAACAGACAACCAAATTGACCCTTTGTTGACCTTCCTTCGAGACGAATTGCAAGGAAAACTCGAGAAACCGCGACTGAATCGCCTCTTATCTTCTACGGAACAAAATATATTGGCGAGTTTTCCTCAGAAGGTTCGATTCCTCGTTGACCGGGGAATCCCCGTTGACCAGGTTGTGCATGTGCTCAACAAAGTGAGTTTGCCAAAGGTCTTGTGTGGCAGGTCGGTTGATGAAATCGATAGAACTTTAGCTTTCTTGGAACCCTTTGGTGGCATTGATTTGATTCTTAAACGCCCTCAAATTTTGAACCATGATTTGGATGCTCAAATTATTCCAAGAGTGAATGTTCTGATGGAGCTTAGTGATGGAGATGTGGATAGTGTTGGGAAAGTGTTGGTTAGGTTTCCCCTTTTTTTGAACTATAGTGTGGAACATGTGGAGGGACATGTTGGGTTTTTGAGTTCTTTTGCTGAGCTAGATTACAGACAGATATTTAGGATAATACAAGTGTATCCGGCTGTTGTTACTGCCAGCAGAGAGAGGAAACTGCGTCCAAGAATACAGTTTCTCAAGGACTGCGGGTTAGTCTCAGATGAAATCTTCAAGTTCTTGATTAAAGCACCCACATTTCTCAGCACTTCATTCCATGAGAACATTGCATATAAGCTGGTGTTGCTGGTGAAGATTGGGTATAGGTTCAGGACAAAGGACTTCTCAGTGGCGGTTAGGTCTGCCACTAGGACAAACAGTATGAACATGCAGAAGGTGATTGGTATGTTCTTGAATTATGGGTTTTCATGTGAAGAGATCGTTGCCATGAGCAAGAAGCATCCACAAATACTACAGTATAATCACGCTTCTTTGGAGATGAAGATGGAATACTTGATAGAGGAAATGGGGCGTGACACTGAGGAGTTACTGGTTTTTCCTGCATTCCTTGGGTACAAGTTAGATGATAGGATTAAGCATAGGTATGAAGTGAAGAAGAGTGTTAGAGGTGCAGGAATGTCTATCAATAAGCTTTTATCTGTTTCCGAGGAGACATTCACTGGCAAACCAAAAAAGGCCCATGCATAG 1572 0.4447 MFSVFTTATSLNTISSTWALQRWCCHLLLCLVTVGVPVLLPSSVHSHYQTHPLVILQPFTLSFSLNPNAHWLKSTSNPNYQTATPFVAVAAPIPFPLLMLKPVASFFALFQEIGIGFEETRVLFSNNPDLTSVSVESLRARLSSLRSLDFDPLALGKLITKRPTVLTDNQIDPLLTFLRDELQGKLEKPRLNRLLSSTEQNILASFPQKVRFLVDRGIPVDQVVHVLNKVSLPKVLCGRSVDEIDRTLAFLEPFGGIDLILKRPQILNHDLDAQIIPRVNVLMELSDGDVDSVGKVLVRFPLFLNYSVEHVEGHVGFLSSFAELDYRQIFRIIQVYPAVVTASRERKLRPRIQFLKDCGLVSDEIFKFLIKAPTFLSTSFHENIAYKLVLLVKIGYRFRTKDFSVAVRSATRTNSMNMQKVIGMFLNYGFSCEEIVAMSKKHPQILQYNHASLEMKMEYLIEEMGRDTEELLVFPAFLGYKLDDRIKHRYEVKKSVRGAGMSINKLLSVSEETFTGKPKKAHA 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01289 523 Gene3D Transcription termination factor 3, mitochondrial 97 289 IPR038538 -
Vian4g01289 523 Gene3D Transcription termination factor 3, mitochondrial 290 522 IPR038538 -
Vian4g01289 523 SMART mt_12 156 185 IPR003690 GO:0003690|GO:0006355
Vian4g01289 523 SMART mt_12 436 467 IPR003690 GO:0003690|GO:0006355
Vian4g01289 523 SMART mt_12 330 361 IPR003690 GO:0003690|GO:0006355
Vian4g01289 523 SMART mt_12 257 288 IPR003690 GO:0003690|GO:0006355
Vian4g01289 523 SMART mt_12 366 397 IPR003690 GO:0003690|GO:0006355
Vian4g01289 523 SMART mt_12 121 151 IPR003690 GO:0003690|GO:0006355
Vian4g01289 523 SMART mt_12 468 500 IPR003690 GO:0003690|GO:0006355
Vian4g01289 523 SMART mt_12 294 325 IPR003690 GO:0003690|GO:0006355
Vian4g01289 523 Pfam mTERF 368 514 IPR003690 GO:0003690|GO:0006355
Vian4g01289 523 Pfam mTERF 109 388 IPR003690 GO:0003690|GO:0006355
Vian4g01289 523 PANTHER CGI-12 PROTEIN-RELATED 100 285 IPR003690 GO:0003690|GO:0006355
Vian4g01289 523 FunFam - 98 286 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vian4g01289 mTERF 2.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01289 - - pvu:PHAVU_009G045200g 749.199