Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01287 ATGGGGGAGGTGGTCATGAGTGGAGAGAAGTCAGTCAGAGTGGAGAAGGAAGAGAGTGGGAGTGGGAGCAAGGGTGAATTGAAGGGCTTGATGAGGTGGGAGAAGTTTCTTCCCAGGATGATTTTGAGGGTGTTATTGGTTGAAGCCGATGACTCCACAAGACAGATTATTGCTGCGCTTCTCAGAAAATGCAGCTACAAAGTTGCTGCTGTTCCTGATGGGTTGAAGGCGTGGGAATTACTCAAGGGAAGACCGGGCAATATTGATCTAATACTGACGGAGGTGGATTTGCCATCCATATCTGGCTATGCACTTCTTACCTTAATTATGGAGCATGATATTTGCAAAAACATCCCTGTCATAATGATGTCTTCCCAAGATTCAATTAGCACGGTATACAAATGCATGCTGAGGGGTGCTGCCGATTATCTTGTTAAGCCAATAAGAAAAAATGAACTGAGAAATCTGTGGCAACATGTTTGGAGAAGACAATCATCAGCCACTGGCATAAATGGTCCCCAAGATGAGAGTGTTGCACAGCAGAAGGTCGAAGCCACTGCTGAAAATAATGCTGCTAGTAATCGTTCAAGTGGTGATGCTGCTTGCATTCAGCGAAATATGGAATTAATTGAGAAAGGAAGTGATGCACAGAGCTCATGTACTAAGCCTGACTTGGAAGCTGAGAGTGGGCCTGTTGATAACATGCAGGCATTTTCTCCACTGAAATGTGGGGAAGAATATCCAAGTGGAGCAGAGACACAAGAGGTTGAAACATGCATTCGTTTAGGACAGACATTGATGATGAATGACAGTCATGCTGGAGGATTAACTATGCACAGAACTGGTGAAGCAAGCACAACTAATGACAAGGATGCTGATCTGGAGCATTTGGGGAATGCTAGCATCAGTGGTGAGGCTCATGACAATCACTATGTTCAAATTAACTCATCTAAGGAAGCTATTGACTTGATTGGAGCATTTCATACTCATCCCAACTGGACGGTAAAAAGTCCCACAGTTGATTGCACAGACAAGGTTGACCTTTCTCCTCAATTAGATCTTTCTCTGAGAAGATCTCGTCCCAGCAGCTTTGAGAATGAACTCACTGAAGAAAGGCACACCCTGATGCATTCCAATGCTTCAGCCTTCAAACGGTATACTAACAGGCAATTGCAAGTATTGACGCCTGCAGCATTAGTTAACTTCACTGACCAACAAAGAGATCAGAGTGCAAATGGTGACAAAAGCATCTCACACATTGTTCCTGGCTGCAACTCCGATAGTTCAGCACCAGGTATGCAAAGATGTATCGTGTCTCCAACTACAGTCCAATCAAAAGAGTCTGAAATTGCAACCTCACACTCTCAGCAAGGGCATTCTCTCCCAATTCCAGTAAAGGGTGTAAGGTTCAATGATCTATGCACAGCCTATCGTTCTGTACTTCCTTCAATGTTTCGTACACAATCAGGTCCACCAGTAATGCCAAGTCCAAGTTCAGTTGTGCTCCTTGAACCAAACTTTCAGAATGCATTTTATCAGTCAAACATTAAAGAGAGTAGTACAGAGCAGCTTTATCAACCTCTTGGTCCAAATGGGAACAGTTCCCAGAATCACATCGTGTACACACAGGAACACAAATCAGAACATGCGGAGGATCGCGGGCATATCTCTCCTACAACTGATCAAAGTGTGTCAAGTAGTTTCTGTAATGGAAACGCAAGCCATTTTAATAGCATCGGTTATGGAAGCAACTGTGGAAGTAGCAGCAATGCCGATCAAGTTACCACTGTCAGGGTAGCTTCAGAGAACAAGAATGAGGACCTCACAAACAATGCAAACACTCATCGATCCATCCAAAGAGAAGCAGCACTAAACAAATTCCGGTTGAAAAGAAAAGAGAGATGCTATGAGAAGAAGGTTCGATATGAGAGCAGAAAGAAACTAGCAGAGCAGCGTCCAAGAGTGAAAGGACAGTTTGTTCGTCAAGTTCATCCTGATTCTCTTGTTGCAGAACAAGATGGTAAAGAATATGATCATTCACGGATTTCTGACTCACTGGAGAGGAGAGCATGA 2073 0.438 MGEVVMSGEKSVRVEKEESGSGSKGELKGLMRWEKFLPRMILRVLLVEADDSTRQIIAALLRKCSYKVAAVPDGLKAWELLKGRPGNIDLILTEVDLPSISGYALLTLIMEHDICKNIPVIMMSSQDSISTVYKCMLRGAADYLVKPIRKNELRNLWQHVWRRQSSATGINGPQDESVAQQKVEATAENNAASNRSSGDAACIQRNMELIEKGSDAQSSCTKPDLEAESGPVDNMQAFSPLKCGEEYPSGAETQEVETCIRLGQTLMMNDSHAGGLTMHRTGEASTTNDKDADLEHLGNASISGEAHDNHYVQINSSKEAIDLIGAFHTHPNWTVKSPTVDCTDKVDLSPQLDLSLRRSRPSSFENELTEERHTLMHSNASAFKRYTNRQLQVLTPAALVNFTDQQRDQSANGDKSISHIVPGCNSDSSAPGMQRCIVSPTTVQSKESEIATSHSQQGHSLPIPVKGVRFNDLCTAYRSVLPSMFRTQSGPPVMPSPSSVVLLEPNFQNAFYQSNIKESSTEQLYQPLGPNGNSSQNHIVYTQEHKSEHAEDRGHISPTTDQSVSSSFCNGNASHFNSIGYGSNCGSSSNADQVTTVRVASENKNEDLTNNANTHRSIQREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQVHPDSLVAEQDGKEYDHSRISDSLERRA 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01287 690 ProSiteProfiles CCT domain profile. 620 662 IPR010402 GO:0005515
Vian4g01287 690 MobiDBLite consensus disorder prediction 214 233 - -
Vian4g01287 690 MobiDBLite consensus disorder prediction 9 25 - -
Vian4g01287 690 Pfam Response regulator receiver domain 44 155 IPR001789 GO:0000160
Vian4g01287 690 MobiDBLite consensus disorder prediction 643 659 - -
Vian4g01287 690 PANTHER TWO-COMPONENT RESPONSE REGULATOR 43 227 IPR045279 GO:0009736
Vian4g01287 690 MobiDBLite consensus disorder prediction 544 566 - -
Vian4g01287 690 Pfam CCT motif 620 662 IPR010402 GO:0005515
Vian4g01287 690 SUPERFAMILY CheY-like 42 166 IPR011006 -
Vian4g01287 690 MobiDBLite consensus disorder prediction 668 690 - -
Vian4g01287 690 Gene3D - 40 272 - -
Vian4g01287 690 CDD psREC_PRR 44 147 - -
Vian4g01287 690 ProSiteProfiles Response regulatory domain profile. 43 161 IPR001789 GO:0000160
Vian4g01287 690 MobiDBLite consensus disorder prediction 643 690 - -
Vian4g01287 690 MobiDBLite consensus disorder prediction 1 25 - -
Vian4g01287 690 SMART REC_2 42 157 IPR001789 GO:0000160
Vian4g01287 690 MobiDBLite consensus disorder prediction 167 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01287 Vian-Chr4 26047333 26051764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01287 319 481 Response Regulator Gene Family AT5G24470 30.409 3.17e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Vian4g01287 Response_reg 3.7e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01287 K12130 - gmx:100777119 1115.52